Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_004288.1 Length=5002 Score E Sequences producing significant alignments: (Bits) Value seq35969 567 2e-158 >seq35969 Length=567 Score = 567 bits (628), Expect = 2e-158 Identities = 367/402 (91%), Gaps = 0/402 (0%) Strand=Plus/Plus Query 1581 GAATTCGAATATGTTTATAGAACTGAATCTATTTCAAAAGAATCAATACAACCCGAGCGA 1640 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 166 GAATTCGAATATGTTTATAAAACTGAATCTATTTCCAAAGAATCAATACAACCCGAGCGA 225 Query 1641 CAGTCGCAACAATTGGAAGAGAGCAACAATCAGGATGAAAGTGGACCTTCCGGACGACAG 1700 |||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 226 CAGTCGGAACAATTGGAAGAGAGCGACGATCAGAATGAAAGTGGACCTTCCGGACGACAG 285 Query 1701 CCGACAAGCCTACCAAATAAAAGAGATAATAAATGCACAAATGTCCCGCATGGAAAATCA 1760 | ||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||| || Sbjct 286 CAGACAAGCTTACCAAATAAAAGAAATAATAGATGCACAGATGTCCCGCATGGAAAACCA 345 Query 1761 TCCCGAAACGGAAACCCAGTCGAAAAGTTCGTGGAACAATTCAAACTCAGGCCAACATGG 1820 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 346 TCCAGAAACGGAAACCCAGTCGAAAAGTTCGTGGAACAATTCAAGCTCAGGCCAACATGG 405 Query 1821 CCCTTGGAACACATATTAGACACTAAAGATTGGCTTGAAAGTGAATGGGGCACGTACATA 1880 ||||||||||||||||||||||| || |||||| | |||||||||||| | || |||||| Sbjct 406 CCCTTGGAACACATATTAGACACAAAGGATTGGATGGAAAGTGAATGGAGTACATACATA 465 Query 1881 GCAAGTGACAAACAAATACAACGAACCTTCCAAATACTTATGAAAATAACAATGAATATG 1940 |||||||||||||||||||||||||| || |||||| | |||||||| || ||||||||| Sbjct 466 GCAAGTGACAAACAAATACAACGAACATTTCAAATATTAATGAAAATTACTATGAATATG 525 Query 1941 ACCTACAGCGAACTAAAAATGCTCTACCAAAATGAACATACA 1982 || || ||||| ||||||||||| || |||||||||||| Sbjct 526 ACTTATCATGAACTCAAAATGCTCTATCAGAATGAACATACA 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15887025842790