Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq95894 549 7e-153 >seq95894 Length=5392 Score = 549 bits (608), Expect = 7e-153 Identities = 935/1346 (69%), Gaps = 31/1346 (2%) Strand=Plus/Minus Query 3023 CAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAGGA--AATTCAAATGTCTAATGTA 3078 || |||||||| || |||||| |||| || |||| |||| ||||||||| | Sbjct 1742 CAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATT---ATGTCTAATATT 1686 Query 3079 CAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTCATCTTGCCTT--TGACTGTGGCA 3136 |||||| ||| || ||| |||||| || ||||||| ||| | ||| | || Sbjct 1685 CAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA 1627 Query 3137 TGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGC 3196 | |||||||||| | || ||||| ||||| |||||||||||||| ||||| ||| Sbjct 1626 -GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGA 1568 Query 3197 TTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTA 3256 | || || ||||| ||| | |||||||| || |||||||||| | |||||||| |||| Sbjct 1567 TGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA 1508 Query 3257 AGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCATGTTTATGGCGACCAGTGGATTC 3316 || || |||| || || || | || |||||||| |||||||| || ||||||||| Sbjct 1507 CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTA 1448 Query 3317 AGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATC 3376 |||| ||| |||||||||||||| ||||| || |||||| | | | ||| Sbjct 1447 AGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATA 1388 Query 3377 CGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGT 3433 |||||||| | || | | || || ||| |||| | ||||| || |||||| Sbjct 1387 TTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---ATCCCTAAGC 1331 Query 3434 TTTTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTG 3493 |||| |||| | ||| |||| || || || |||||||| || ||||||||||||| Sbjct 1330 ATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTG 1271 Query 3494 AGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTT 3553 | ||||||||||| ||||| | | |||||| | ||||||||||||||| | ||||||| Sbjct 1270 ACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTT 1211 Query 3554 GCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAG 3613 ||||||| || ||||| |||||| |||||||||| ||||| || || | | || Sbjct 1210 GCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCC 1151 Query 3614 AAATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGC 3673 ||||| | | | || || ||||| ||||||||| ||||||| |||||||| | Sbjct 1150 AAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATT 1091 Query 3674 TTCACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCT 3733 | || ||||| || || ||| |||||| ||||||||||||| ||||||||| || | Sbjct 1090 TGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCAT 1031 Query 3734 TTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACT 3793 |||| ||| |||||| ||||| || || ||||| || || ||||| |||| | | | Sbjct 1030 TTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATC 971 Query 3794 TCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTG 3853 ||||||| || || || || ||||| || || |||||| | || | || || || |||| Sbjct 970 TCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTG 911 Query 3854 GTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTG 3913 |||| || || ||||| | |||||| || |||||||| ||||| || ||||||||||| Sbjct 910 GTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCA 851 Query 3914 TCATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATC 3973 ||| | ||| | || || |||| || ||||||| | ||| || || | Sbjct 850 CTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACC 791 Query 3974 TTGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTA 4033 || | ||| | || || |||||||| ||||||||||||| | | || ||| | Sbjct 790 TTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCA 731 Query 4034 ACTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATT 4092 ||||||| || || || ||| ||| | ||| | |||||| |||| ||| || Sbjct 730 ACTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAG 672 Query 4093 AAGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAG 4152 ||| |||| |||| ||| | ||||||||| | ||| || ||| | Sbjct 671 AAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCT 612 Query 4153 TATCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGAT 4212 ||||| | | | || ||||| ||| || | || ||| || |||||| Sbjct 611 TATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG-- 563 Query 4213 AATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAG 4272 || | || ||| | ||| |||| || || || ||||| || |||||||| Sbjct 562 -ATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTT 504 Query 4273 CAGTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCT 4332 |||||| | |||||||| | |||| | | ||| || | ||||||||| || |||| Sbjct 503 CAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCG 444 Query 4333 ACTGTACGTGATTCCATTATGACCTC 4358 || || ||||| || ||||| || Sbjct 443 ACCACTCGCGATTCAATCATGACTTC 418 Score = 370 bits (410), Expect = 4e-99 Identities = 320/397 (81%), Gaps = 0/397 (0%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 2252 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 2193 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 2192 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 2133 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2132 ACGCTGGACTTTGTAGGATNCCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2073 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 2072 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 2013 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 2012 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 1953 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 1952 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 1893 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGAT 2956 | ||||| |||||||| ||| | ||| ||| || || Sbjct 1892 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 1856 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 3528 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3469 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 3468 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3409 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 3408 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3349 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 3348 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3291 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 3290 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 3232 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 3231 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 3172 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 3171 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 3134 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 4637 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 4578 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 4577 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 4523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19341798048672