Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq95894 618 2e-173 >seq95894 Length=5392 Score = 618 bits (684), Expect = 2e-173 Identities = 951/1342 (71%), Gaps = 26/1342 (2%) Strand=Plus/Minus Query 3022 CAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTAAGGATTATTAATGTCTAATGTACAA 3077 || |||||||| ||| |||||| ||| ||| ||||| | | ||||||||| | ||| Sbjct 1742 CAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAA 1683 Query 3078 ACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCATCTTG-CTT--TTGACTGTGGCATG 3134 ||| || || ||| |||||| || ||||||| ||| ||| ||| | || | Sbjct 1682 ACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG-CTG-GTCA-G 1626 Query 3135 ATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTT 3194 |||||||| | | || ||||| ||||| |||||||||||||| ||||| ||| | Sbjct 1625 ATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATG 1566 Query 3195 GATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTAAG 3254 || || ||||| ||| | ||||||||||| |||||||||| | || ||||| |||| Sbjct 1565 GACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACT 1506 Query 3255 GTTGACTTTTTCACTTTCTATATTCCGCATCGTCATGTTTATGGTGATCAGTGGATTCAA 3314 || ||| |||| ||||| ||| | || |||||||| ||||||||||| ||||||||| | Sbjct 1505 GTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAG 1446 Query 3315 TTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACTACTAAGTATCCG 3374 || ||| ||||||||| |||| | || || || | |||| |||||| ||| Sbjct 1445 TTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATT 1386 Query 3375 GATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTG 3434 || |||| | || | |||| || ||| ||| | | ||| || |||||| |||| Sbjct 1385 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTG 1326 Query 3435 CATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGT 3494 |||| |||| ||||||| ||||| |||||||| ||||||||||||||||| ||| Sbjct 1325 TTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGT 1266 Query 3495 ACTGAAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTTG 3553 || || ||||| ||| | |||| ||| |||||| |||||||||| |||||||| || Sbjct 1265 ACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTG 1207 Query 3554 CCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAAT 3613 |||||| |||| |||||| ||||||| |||||||| || ||| |||| || ||||| Sbjct 1206 CCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAAT 1147 Query 3614 GGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCA 3673 | | | | || || ||||| ||||||||| |||| || |||||||| | | || Sbjct 1146 GACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCA 1087 Query 3674 CACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGG 3733 ||||| || || ||| ||| || ||||||||||||| ||||||||| || ||||| Sbjct 1086 TACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGG 1027 Query 3734 CGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTTG 3793 ||| |||||| ||||| || || ||||| || || ||||| |||| | || | || Sbjct 1026 AGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTG 967 Query 3794 GGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCG 3853 ||| || || || || ||||| || || |||||| | || | || |||||||| || || Sbjct 966 GGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCG 907 Query 3854 AGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCAT 3913 ||||||||||| | |||||| || |||||||| ||||| || ||||||||||| || Sbjct 906 TGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTAT 847 Query 3914 GATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGT 3973 | | ||| | ||| ||||| || ||||||| || ||| ||| || ||| Sbjct 846 GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAA 787 Query 3974 TGGTCGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTT 4033 | | | ||||||||||||||| ||||||| ||||| | |||| ||| || || Sbjct 786 CGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTT 727 Query 4034 GCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGAT 4093 |||||||||||| |||||| |||| |||||||| |||| || | ||| | Sbjct 726 GCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTT 667 Query 4094 TAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATC 4152 |||| |||| ||| | ||||||||| | || |||||| || | |||| Sbjct 666 TAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATC 608 Query 4153 AGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACC 4212 | | ||||| || ||||| ||| || | || ||| || ||||||| | Sbjct 607 ACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC 557 Query 4213 TTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGT 4272 |||| || | || ||| ||| |||| ||| | ||||||||||| |||| Sbjct 556 --AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGT 500 Query 4273 TGCTTCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCCATATTCCTACTG 4332 || | |||||||||| ||||| | | |||||| | ||||||||| || | || || Sbjct 499 TGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCA 440 Query 4333 TTCGTGATTCTATTATGACCTC 4354 ||| ||||| || ||||| || Sbjct 439 CTCGCGATTCAATCATGACTTC 418 Score = 369 bits (408), Expect = 1e-98 Identities = 310/381 (81%), Gaps = 0/381 (0%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 2252 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 2193 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 2192 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 2133 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| Sbjct 2132 ACGCTGGACTTTGTAGGATNCCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2073 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 2072 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 2013 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858 || |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||| Sbjct 2012 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 1953 Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918 |||| ||| ||||| | |||||| || || | | | ||| || ||||| || Sbjct 1952 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 1893 Query 2919 GCTCGTCAGAAATTACGCGCA 2939 | ||||| |||||||| ||| Sbjct 1892 GTGCGTCAAAAATTACGTGCA 1872 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 3528 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3469 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 3468 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3409 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 3408 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3349 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 3348 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3291 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 3290 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 3232 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 3231 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 3174 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 3173 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 3134 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 5017 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 4960 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 4959 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 4903 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 4902 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 4856 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 4855 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 4800 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 4799 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 4740 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 4739 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 4683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19348190974816