Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq28339 618 2e-173 >seq28339 Length=5449 Score = 618 bits (684), Expect = 2e-173 Identities = 951/1342 (71%), Gaps = 26/1342 (2%) Strand=Plus/Minus Query 3022 CAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTAAGGATTATTAATGTCTAATGTACAA 3077 || |||||||| ||| |||||| ||| ||| ||||| | | ||||||||| | ||| Sbjct 5443 CAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAA 5384 Query 3078 ACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCATCTTG-CTT--TTGACTGTGGCATG 3134 ||| || || ||| |||||| || ||||||| ||| ||| ||| | || | Sbjct 5383 ACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG-CTG-GTCA-G 5327 Query 3135 ATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTT 3194 |||||||| | | || ||||| ||||| |||||||||||||| ||||| ||| | Sbjct 5326 ATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATG 5267 Query 3195 GATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTAAG 3254 || || ||||| ||| | ||||||||||| |||||||||| | || ||||| |||| Sbjct 5266 GACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACT 5207 Query 3255 GTTGACTTTTTCACTTTCTATATTCCGCATCGTCATGTTTATGGTGATCAGTGGATTCAA 3314 || ||| |||| ||||| ||| | || |||||||| ||||||||||| ||||||||| | Sbjct 5206 GTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAG 5147 Query 3315 TTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACTACTAAGTATCCG 3374 || ||| ||||||||| |||| | || || || | |||| |||||| ||| Sbjct 5146 TTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATT 5087 Query 3375 GATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTG 3434 || |||| | || | |||| || ||| ||| | | ||| || |||||| |||| Sbjct 5086 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTG 5027 Query 3435 CATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGT 3494 |||| |||| ||||||| ||||| |||||||| ||||||||||||||||| ||| Sbjct 5026 TTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGT 4967 Query 3495 ACTGAAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTTG 3553 || || ||||| ||| | |||| ||| |||||| |||||||||| |||||||| || Sbjct 4966 ACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTG 4908 Query 3554 CCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAAT 3613 |||||| |||| |||||| ||||||| |||||||| || ||| |||| || ||||| Sbjct 4907 CCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAAT 4848 Query 3614 GGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCA 3673 | | | | || || ||||| ||||||||| |||| || |||||||| | | || Sbjct 4847 GACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCA 4788 Query 3674 CACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGG 3733 ||||| || || ||| ||| || ||||||||||||| ||||||||| || ||||| Sbjct 4787 TACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGG 4728 Query 3734 CGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTTG 3793 ||| |||||| ||||| || || ||||| || || ||||| |||| | || | || Sbjct 4727 AGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTG 4668 Query 3794 GGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCG 3853 ||| || || || || ||||| || || |||||| | || | || |||||||| || || Sbjct 4667 GGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCG 4608 Query 3854 AGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCAT 3913 ||||||||||| | |||||| || |||||||| ||||| || ||||||||||| || Sbjct 4607 TGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTAT 4548 Query 3914 GATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGT 3973 | | ||| | ||| ||||| || ||||||| || ||| ||| || ||| Sbjct 4547 GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAA 4488 Query 3974 TGGTCGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTT 4033 | | | ||||||||||||||| ||||||| ||||| | |||| ||| || || Sbjct 4487 CGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTT 4428 Query 4034 GCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGAT 4093 |||||||||||| |||||| |||| |||||||| |||| || | ||| | Sbjct 4427 GCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTT 4368 Query 4094 TAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATC 4152 |||| |||| ||| | ||||||||| | || |||||| || | |||| Sbjct 4367 TAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATC 4309 Query 4153 AGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACC 4212 | | ||||| || ||||| ||| || | || ||| || ||||||| | Sbjct 4308 ACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC 4258 Query 4213 TTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGT 4272 |||| || | || ||| ||| |||| ||| | ||||||||||| |||| Sbjct 4257 --AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGT 4201 Query 4273 TGCTTCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCCATATTCCTACTG 4332 || | |||||||||| ||||| | | |||||| | ||||||||| || | || || Sbjct 4200 TGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCA 4141 Query 4333 TTCGTGATTCTATTATGACCTC 4354 ||| ||||| || ||||| || Sbjct 4140 CTCGCGATTCAATCATGACTTC 4119 Score = 372 bits (412), Expect = 1e-99 Identities = 311/381 (82%), Gaps = 0/381 (0%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 560 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 501 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 500 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 441 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 440 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 381 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 380 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 321 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858 || |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||| Sbjct 320 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 261 Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918 |||| ||| ||||| | |||||| || || | | | ||| || ||||| || Sbjct 260 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 201 Query 2919 GCTCGTCAGAAATTACGCGCA 2939 | ||||| |||||||| ||| Sbjct 200 GTGCGTCAAAAATTACGTGCA 180 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 1836 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1777 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 1776 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1717 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1716 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1657 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 1656 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1599 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 1598 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1540 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 1539 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 1482 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 1481 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1442 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 3325 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 3268 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 3267 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 3211 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 3210 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 3164 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 3163 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 3108 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 3107 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 3048 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 3047 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 2991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19355907532912