Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20rhysodes_20[genbank_20GCA_5F000826385.1_202015-01-07] 62,836 sequences; 75,821,316 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq28339 571 2e-159 >seq28339 Length=5449 Score = 571 bits (632), Expect = 2e-159 Identities = 942/1345 (70%), Gaps = 32/1345 (2%) Strand=Plus/Minus Query 3046 CAATTTTAATTAACGGGGCTTCGGCCCCTA---TAAGGATTCTTAAATGTCAAACGTGCA 3102 ||||||||||| ||||||||||||||| | ||||| | | |||| || | || Sbjct 5443 CAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTA-TGTCTAATATTCA 5385 Query 3103 AACTTCCGCTGAACGTATTCCTCACGACCTTTCTCATCTGGTTTTTGATGCAGGCAAAAT 3162 |||| ||| || ||||| || || |||||||| ||||| | || ||| || | || Sbjct 5384 AACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGAT 5325 Query 3163 TGGTCGTTTAAAGGTTGTTTCTTGGACTCCTGTTGTTGCAGGTGATTCTTTTGAGCTTGA 3222 ||||||| | | |||| ||||| ||| | || || || || || ||| | || Sbjct 5324 TGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGA 5265 Query 3223 TATGATTGGCGCTATTCGCCTTTCCCCGCTTCGTCGTGGCCTTGCTGTTGACTCTCGTGT 3282 |||||||| | || ||||| || | ||||||||||||||| |||||||| ||| Sbjct 5264 CGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGT 5205 Query 3283 TGACCTGTTCACGTTTTATGTCCCTCATCGTCATGTATATGGTGAGCAGTGGATTGATTT 3342 ||| | || || |||||||||||||||||||| || |||||||| ||||||||| | || Sbjct 5204 AGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTT 5145 Query 3343 TATGAAGCAAGGTGTTGATGCTGCTCCTTTGGCCCCTGTTCAGTGCTCTCGCGGTTGGGA 3402 |||||| | |||||| |||| ||||| | | ||||| | | || |||| | Sbjct 5144 CATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAA---CACTACTGGTT---A 5091 Query 3403 TAGTGCTCAG------TATCTTGCTACTATTCCGTCTAGTAACTTAAAGGTTCCTAAG-- 3454 || || || | ||||| || ||| || || | || | |||||| Sbjct 5090 TATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCA 5031 Query 3455 TTTCTTCATCAAGGTTACCTGAACATTTACAATAATTACTTTAAAGCTCCGTGGATGGAT 3514 ||| || ||| ||||| |||| || || || || || |||||||| ||||||||| | Sbjct 5030 TTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCT 4973 Query 3515 GACCTGACTTATGCCAACCCGTCTAATATGGAGGGTGAAGATGTTCGTTTTGGTGTTCGT 3574 |||| || | || ||||| | | | | || |||| ||||| |||| | ||| Sbjct 4972 GACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGT 4913 Query 3575 GCATGTAACTTGAAAACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAACCTCTCAT 3634 || | | |||| ||||||||||||||||||||||| || ||||| |||| Sbjct 4912 TGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGC 4853 Query 3635 TCTATGGAGACTGAAACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTTATGCTCAA 3694 ||| |||| |||| || ||||||||||||||| |||| || ||||||||| | Sbjct 4852 CAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAAT 4793 Query 3695 TTACATACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTGTTAACGAA 3754 || |||||||| || || ||||||||||||||| ||||| | |||| || || | Sbjct 4792 TTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCA 4733 Query 3755 TTTGGAGGTAGTACTTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGCATTCTGAG 3814 |||||||||| || |||||||| || || || |||||||| ||||| |||| ||| | Sbjct 4732 TTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAAT 4673 Query 3815 TTCTGGGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTCAGTTCTCC 3874 ||||||| || |||||||||||||| || || ||||||| || | || ||||| || Sbjct 4672 CTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCT 4613 Query 3875 GGTCGTGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTGAGCATGGC 3934 |||||||| || ||||| | ||| ||||| || ||||| ||||| |||||||||||| Sbjct 4612 GGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGC 4553 Query 3935 ACTATGTTCACACTCGCATTGGTCCGCTTCCCGCCGACTC--ATGAAATGGAGATGCATT 3992 |||||||| || || || | || || || ||||| ||| | ||| ||||| || | Sbjct 4552 ACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGT 4495 Query 3993 ACTTAGTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGCTTTG-ATG 4051 || | | ||||| | |||||||||||| ||| | ||| | ||||||| |||| ||| Sbjct 4494 ACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATG 4435 Query 4052 GCTAACTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGT 4111 || |||||||| || ||||| || |||| | | |||| |||||| | | | Sbjct 4434 GC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCT 4376 Query 4112 GCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGATCG--CGTTGCA 4168 ||||||||||| ||||| |||||||||||||| |||| |||| ||| ||| | Sbjct 4375 AAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGTATGTTTCT 4319 Query 4169 TTGCCGTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTGATGATATT 4228 | ||| || |||||| || || || ||| | | || |||| |||| | Sbjct 4318 CCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTG 4259 Query 4229 AAGCAGCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTATGCAGCTT 4288 | | ||||| || || || | || || || ||||||||| | ||| | Sbjct 4258 CAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTG 4199 Query 4289 GCGCACTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTAATATGCCGACCACT 4348 ||| ||||||| ||| ||| |||||| ||| ||||||| ||| ||||||||||| Sbjct 4198 TTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACT 4139 Query 4349 CGCGACTCTATTATGACCTCTTGAT 4373 ||||| || || ||||| || |||| Sbjct 4138 CGCGATTCAATCATGACTTCGTGAT 4114 Score = 444 bits (492), Expect = 2e-121 Identities = 340/400 (85%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 562 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 503 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 502 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 443 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 383 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 382 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 323 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 322 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 263 Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939 |||||| ||||||||||| || ||| || || || |||| ||| ||||| Sbjct 262 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 204 Query 2940 AATGCTCGTCAGAAACTTCGTGCAAGTGGAGTAATGTAAT 2979 || | ||||| ||| | |||||| ||||| ||||||| Sbjct 203 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 164 Score = 165 bits (182), Expect = 3e-37 Identities = 278/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352 || |||||| |||| ||||| || | || | ||||| || || || |||| ||| || Sbjct 1836 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1777 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 1776 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1717 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 1716 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1657 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||||| |||| Sbjct 1656 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1599 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1598 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1540 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 1539 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1480 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 1479 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1442 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Minus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 3131 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 3072 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 3071 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 3015 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 3014 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 2955 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 2954 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 2895 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 2894 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 2835 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 2834 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 2778 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 2777 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19288755036928