Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq4008 1754 0.0 seq5519 138 4e-29 >seq4008 Length=4818 Score = 1754 bits (1944), Expect = 0.0 Identities = 2293/3148 (73%), Gaps = 108/3148 (3%) Strand=Plus/Minus Query 468 TAATCGAAGAGTTAGACGAATGCTACAACGTGCTCGGACAACTTGATATTAATAACACTA 527 |||| || || || | |||||||||| |||||| |||||||||||||||||||||| Sbjct 3114 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 3055 Query 528 TAGACCACAAACCTATCGGTAACGCCAAATGGGACTTAATGTATGAAAAACCTGTCTATA 587 |||||||| || || ||| |||||| ||| | | || || | || Sbjct 3054 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTT---- 2999 Query 588 AACACTGGTATG-----AACTGGTATCAAAACGACCCCTTAAATCAATCAGAGAGGACTA 642 || | | | || | |||| | |||| || ||||| || | || || || Sbjct 2998 -ACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTA 2940 Query 643 CAACTATGCAAAGGCTAAGGGTACTAAAGATGAGTGCTCGAAAATCCTTGAGGAATCCAC 702 || || | || || |||| ||| |||||||| || | | | || |||| ||||| Sbjct 2939 TAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCAC 2880 Query 703 CATGAAATCCCGCCGTGGCTTTACCGTTCAGAGATTGATGAATGCTATGCGTACTGCCCA 762 |||||||| || | |||||| | ||||| | ||||||||||| ||||| || || Sbjct 2879 TATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCA 2820 Query 763 CACTGATGGCTGGTATGTTGTATTCGATACTCTCACCTTAGCTGATGATCGTATTA-AGG 821 ||||||| |||| | | || || || |||||||| || ||||| || || |||| ||| Sbjct 2819 TGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCG-ATTAGAGG 2761 Query 822 ACTTCTATGCTAACCCCAATGCTCTTCGTGACTATTTCCGTGATATTGGCCGTATGGTTC 881 || |||| ||| ||||||||| | ||||||||||| ||||||||||| |||||||||| Sbjct 2760 CGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTC 2701 Query 882 TCACTGCCGAGGGTCGTTCGGTCCATGATTCATCTTCGGACTGCTATCAGTACTTTTGTG 941 | ||||||||||||| || |||||||| | |||||||||||||| ||||||| Sbjct 2700 TTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTG 2641 Query 942 TGCCTGAGTATGGCACCCAGC--ATGGCCGTTTACACTTTCACGCAGTGCATCTTATGCG 999 ||||||||||||| || ||| |||||||| | || || || || ||||| ||||||| Sbjct 2640 TGCCTGAGTATGGTAC--AGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCG 2583 Query 1000 CACACTTCCTTTGGGTTCTCTCGACCCTAACTTTGGTAAGCTGGTGCGTACTAATCGGCA 1059 ||||||||| ||| | |||||||| |||||| | ||| || | | || || Sbjct 2582 GACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA 2523 Query 1060 AATAAATAGCTTGCAAAACACATGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTA 1119 |||||||||||||||| || ||||||||||||||| ||||||||||||||| || || Sbjct 2522 GTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTA 2463 Query 1120 TTCTCAGGATGCTTTCTCTCGCGCTGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACC 1179 | ||||| ||||| || || |||| ||| | |||||||| ||| | || ||||| || Sbjct 2462 CACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC 2403 Query 1180 CCTTAAATCCACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAATAAAAA 1239 |||||| | ||| ||||||||||| || ||||| || |||||||||||||| ||||| Sbjct 2402 GCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAA 2343 Query 1240 ATCTGATGTTGACATAGCCGCAAAAGGCTTAGGGAATCAAAAATGGAACGCTACATTAAA 1299 || ||| | ||| | || || ||||| |||| | || |||||||| || |||| Sbjct 2342 GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAA 2283 Query 1300 AACGCAGATGGCTCTTTTACCAAAGAAACTATTTCGAATTCGAATGAGCCGCAACTTCGG 1359 ||| || || | || | || ||||| || || |||| ||||||||||||||||||| Sbjct 2282 AACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGG 2223 Query 1360 GATGAAACTACTCCCAATGACGACGCTGACCGCGGAGTGTTTAATCCAACTGACCCAAGT 1419 ||||||| | ||| ||||||| | ||| || ||||||| ||||||||||| ||| | | Sbjct 2222 GATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCT 2163 Query 1420 GGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACG 1479 ||||||||||| ||| ||||||||| | || |||||||||||||| || | |||| | | Sbjct 2162 GGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAG 2103 Query 1480 ATTGAGGCTGGCAAAGCAATCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAA 1539 ||||||||||| ||| |||||||||||||||||| |||||||||||||||||| || Sbjct 2102 ATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAA 2043 Query 1540 TCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTT 1599 |||||| ||||| |||||| || || || || || | |||| ||| |||||||| Sbjct 2042 TCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTT 1983 Query 1600 TATCGCTTCAATGACGCAGAAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACTA 1659 ||||||||| ||||||||||| ||| || | |||||||||||||||| | ||||| || Sbjct 1982 TATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTA 1923 Query 1660 CGTTACTAATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGG 1719 || ||| ||||||||| || |||| |||||| |||||||||||||||||||||| Sbjct 1922 TCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGG 1863 Query 1720 TGGAAAATGAAGAACTTCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACC 1779 ||||||||| || ||| | || ||| | |||||| |||||||| || ||| Sbjct 1862 CGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACC 1803 Query 1780 TTTCGCCATCATCTCAACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCT 1838 ||||||||||| || |||| | | |||| ||||||||| | ||||| || || ||||| Sbjct 1802 TTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCT 1744 Query 1839 CAATATGATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCGTACATGG 1898 |||||| | ||| | | | ||||||||||| | ||||| |||||| || ||||| Sbjct 1743 TAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGG 1684 Query 1899 CAAAGAATCAATGCTTGACATTCTAAATGAACGTGGCCTATTATCCACCTTGCCAAATG- 1957 | ||| || | |||||||| |||| || ||||| || ||| | | | ||| Sbjct 1683 TAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTAT---CTGAGTCCGATGC 1627 Query 1958 -GCTTAAC--TTACAAAGGAATCAAAAATGA---AAGCAAATGAGAACGCAGTAGCCTTT 2011 | | ||| || | | || || |||| ||| | ||| | | ||| || Sbjct 1626 TGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTC 1567 Query 2012 CAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACTGAG 2071 || |||||| | ||||| || || || |||||||| ||| | ||| | || | || || Sbjct 1566 CAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAA 1507 Query 2072 GACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGTGCT 2131 || |||||||| || | || || || || |||||||| ||||||||||| |||||| Sbjct 1506 GATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCT 1447 Query 2132 CGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGCTTT 2191 || ||| ||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 1446 CGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTT 1387 Query 2192 CCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATT 2251 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1386 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATT 1327 Query 2252 CAAACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGTGTC 2311 |||||||| ||||| || ||||||||||||||||| || |||||||| |||||||| ||| Sbjct 1326 CAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTC 1267 Query 2312 GATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGAAAC 2371 || |||||||||||||||||| | |||||||||||||||||||||||||| |||||| Sbjct 1266 GAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAAC 1207 Query 2372 ACTGAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGAGTG 2431 ||||| || ||||| |||||||| | || | |||| ||||| | || || |||||||| Sbjct 1206 ACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTG 1147 Query 2432 ATG-GATGTC------TAAAAAATCTATTCGC---CGCTCTGGT---------------- 2465 ||| ||||| ||||||| | | || ||| ||||| Sbjct 1146 ATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGC 1087 Query 2466 -----------GGCAAATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCT 2514 ||||| |||||| ||||| || |||||||| || || |||||| | Sbjct 1086 GAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTT 1027 Query 2515 AATCTCTAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAACTT 2574 ||| | |||||||||||||||| || || |||||| | |||||||| | |||||| Sbjct 1026 AATTGC--AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTG 970 Query 2575 CCGCTGAACGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGAC 2634 ||| || ||||| ||||||||||| || ||||| | ||| |||||| | || || | Sbjct 969 GCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTC 910 Query 2635 GCCTTAAAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAATGG 2694 | |||| || || || ||||| ||| ||||||| || || | ||| | || | Sbjct 909 GTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCG 850 Query 2695 TAGGCGCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACG 2754 | |||||| | ||||||||||| | |||||||| || ||| | |||||| || ||| Sbjct 849 TTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACA 790 Query 2755 TCTTTACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTATGA 2814 | |||||||| ||| ||||||||||||| || |||||| |||| |||||| | || |||| Sbjct 789 TTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA 730 Query 2815 AGACTGGCGTTAACGCTACTCCTCTGGC-TCCGGTAACTTGTTCCTCTGGCT---GGGAT 2870 || ||| ||||| || |||||||| | | | |||| | |||| | || Sbjct 729 AGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC----ACTACTGGTTATATTGAC 674 Query 2871 TCTGCTGCCTATCTTGGCAC---TATCCCGTCAACTAATTTGAAGGTTCCTAA--ATTCC 2925 ||| || | ||||||||| || ||| || ||| || | ||||| ||| Sbjct 673 CATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAAT---AAAATCCCTAAGCATTTG 617 Query 2926 TTCATCAATCTTATCTCAATATTTACAACAACTACTTTAAGCCGCCGTGGTCTAATGACC 2985 || ||| |||| | ||||| || |||||||| ||||| |||||||| ||||| Sbjct 616 TT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACC 559 Query 2986 TCACCTATGCTAACCCATCTAATATGCCCGCTGAGGAT--TACAAATGGGGCGTTC--GT 3041 ||| | ||||||| ||||| || | | ||| | | | | ||| | Sbjct 558 GTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTT 502 Query 3042 GTCGCTAACTTAAAATCTATCTGGACCGCGCCCCTTCCTCCTGATTCATTAAC-TAAGCA 3100 | || | || |||| | || ||||| || || ||||||||||| | | | | | | Sbjct 501 GCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGAC-TGAGCTTTCTCG 444 Query 3101 GGATATGACTACTGGCGCTACCA---CTATCGATATTATGGGCCTACAAGCTGCCTATGC 3157 | ||||| ||| |||||| |||| || |||||||| || |||||||| ||||| Sbjct 443 CCAAATGACGACT---TCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGC 387 Query 3158 TAAACTCCACACTGAACAGGAACGTGACTATTTCATGACTCGCTACCGCGATATTATGAA 3217 ||| | || ||||| || |||||||| || |||||| || |||| ||| |||| Sbjct 386 TAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTC 327 Query 3218 AGACTTTGGCGGTCACACCTCCTACGACGGTGATAACCGTCCTCTGCTCCTGATGCGCTC 3277 ||||| ||| | ||||| || |||| ||| ||||||||| | || | |||||||| Sbjct 326 TTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTC 267 Query 3278 TGAATTTTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAAACTTCATTGGGTCAGTT 3337 | | | ||||| ||||||||||| || || || ||||||||||| || || || ||||| Sbjct 266 TAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTT 207 Query 3338 CTCTGGTCGCGTCCAACAAACCTTTAATCATAAAGTGCCTCGCTTCTATGTTCCTGAGCA 3397 |||||||| || ||||| |||| ||| ||| ||||| || |||| |||||||||||| Sbjct 206 TTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCA 147 Query 3398 TGGCGTAATTATGACTTTATCTGTTACTCGCTTCCCTCCTACT--CACGAAATGGAAATG 3455 |||| || | ||| | | || ||| || || |||||| || ||| || || Sbjct 146 TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATT 89 Query 3456 CACTATCTCGTCGGTAAGGAATCTCTGACTTATACTGACATTGCCTGTGACCCTGCTCT- 3514 || || || || ||| | || |||||||||| || ||||| | ||||||| | | Sbjct 88 CAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG 29 Query 3515 TATGGCTAACCTGCCTCCGCGTGAAATT 3542 |||||| ||| |||| |||||||||||| Sbjct 28 TATGGC-AACTTGCCGCCGCGTGAAATT 2 Score = 179 bits (198), Expect = 1e-41 Identities = 658/1047 (63%), Gaps = 71/1047 (7%) Strand=Plus/Minus Query 4445 CTCCAACCTCTTAAATAAGGTCTAATCTATGTTCGGTGCAATCGCTGGCGGTATCGCCTC 4504 ||||| || ||||| | |||| || |||||| ||||| || ||||||||||| || || Sbjct 4470 CTCCAGCCACTTAAGTGAGGTG--ATTTATGTTTGGTGCTATTGCTGGCGGTATTGCTTC 4413 Query 4505 CTCTCTCGCTGGTGGACTCCTGAACAAAGCATTCGGGGGCGGTTCTTCCGCTCCCCAATC 4564 |||| |||||||| | || ||| || || |||||| || || Sbjct 4412 TGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGG 4353 Query 4565 TGGCGTTCAAGGTAATGTCCTCGCTACTGA---CAATAATGTA---ATCGGTGCTAATGA 4618 |||| |||||||| |||| || ||||| || ||||| |||| || |||| | Sbjct 4352 TGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTG------A 4299 Query 4619 TGCTGGTATCAAATCCGCTATTCAGGGTTCTAATCCTCCCAATGGTCAACAAGCTGCTCC 4678 ||||||||| ||||| || ||||| || |||||| ||| || | | | || | || Sbjct 4298 TGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGTCCC 4239 Query 4679 CAATGCTATATCGGGCGTTCTTGCCGATACTGGCAAAG-ACGCCCT--ATCTTCAAT-CA 4734 | | | | || || | | | || | |||| |||| || | | | | | | || Sbjct 4238 TAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCA 4179 Query 4735 --CTGGCGCT---GGCGTTA---ATAAACTTATGGAAAAAATCGGACTCTCTA--AAGA- 4783 ||||| || | |||| |||| | | || | ||||| | ||| Sbjct 4178 GGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTC 4119 Query 4784 TGCTGCTGCTAAAGGTAAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAA 4843 ||| |||| |||||| |||||||| |||||||||||| |||| || || || || || Sbjct 4118 TGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA 4059 Query 4844 CCCGTGGGAACGTGCTGGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCA 4903 | ||||| |||||||| |||| |||||| |||||||| |||||||| || ||||| | Sbjct 4058 TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGA 3999 Query 4904 AAACCAAAAGGAATTAACTCGCATGCAGCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNN 4963 || ||||| || | ||| ||||| || ||| Sbjct 3998 GAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCA 3939 Query 4964 NNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAGTCTGTTACTTCTCGGCAAAATACTAA 5023 || ||||| | ||||| || || ||||| || Sbjct 3938 AAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAA 3879 Query 5024 GGACTCTGTGTATGCTCAAAACGAAATGCTCCAATACAACCAAAAAGAATCTATGTCACG 5083 ||| || ||||| ||||| || ||||| || | || || || |||| | || Sbjct 3878 AGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCG 3819 Query 5084 CGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAACAACAAACTTCTGAAATTAT 5143 ||||| ||||| | |||||||| | || |||| ||||| || ||| || ||||| Sbjct 3818 CGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTAT 3759 Query 5144 GCGGCAAATGCTTACTCAGGCTCAAACCTCAGGTCAACACTTTACAAATGACCAAATCCA 5203 ||| |||||||||||||| |||||||| | ||||| | ||||| |||||||||||| | Sbjct 3758 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAA 3699 Query 5204 AGAACTTACTCGAAAGGTCGGCGCTGATATTGATGCTGTTCGTGCTAACACTGAACGTAC 5263 |||| | ||||| ||||| | ||||| |||| |||| | || | Sbjct 3698 AGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTC-----ATCA--------GC 3652 Query 5264 ACATGTAGAAACGGACCGCTCTAAGCAGGAGGTCCAAAACTCTCGTTACGCTTCCTCACA 5323 | | | |||| | | || || | || || || Sbjct 3651 AAACGCAGAATCAG-----------------------------CGGTATGGCTCTTCTCA 3621 Query 5324 AGTCGGTAAAACCGCCAAGGATGTATCAAATGTCATTAGTGACGCATCTTCTGGTATTGT 5383 | || || || |||||| | || |||||| | | ||| || |||||||| | || Sbjct 3620 TATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGT 3561 Query 5384 TGATTATTTTCGTGGCGTTGATAAAGCTGTCGCGGATACTTGGAACAATTATTTCAAAGA 5443 |||| ||||| ||| ||||||||||||| || |||||||||||||||| | ||||| Sbjct 3560 TGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGA 3501 Query 5444 TGGCAAATCGGATGGGATAAGCTCAAA 5470 || ||| | ||||| || |||| || Sbjct 3500 CGGTAAAGCTGATGGTATTGGCTCTAA 3474 >seq5519 Length=694 Score = 138 bits (152), Expect = 4e-29 Identities = 339/506 (67%), Gaps = 31/506 (6%) Strand=Plus/Minus Query 3481 TGACTTATACTGACATTGCCTGTGACCCTGCTCT-TATGGCTAACCTGCCTCCGCGTGAA 3539 |||||||||| || ||||| | ||||||| | | |||||| ||| |||| ||||||||| Sbjct 694 TGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAA 636 Query 3540 ATTGAGGTAAAAGACCTCTTTCACTCTGCTGGT---ACTGGTAAATTCAAAATTGCCGAA 3596 ||| | || || | || | |||| || | || || || || ||||| || Sbjct 635 ATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAG 576 Query 3597 GGTCAATGGTATCGTACTCAGCCTGACCGCGTTGCCTTCC--CTTATAACGCTCTTGACG 3654 ||||| ||||||||| | |||| ||| | ||| ||||| || |||||| | Sbjct 575 GGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC--TCCTGCTTATCACCTTCTTGAAG 518 Query 3655 GCTTCCCTTTCTATTC-TGAACTGCCGTCTAATGATATTCTCGAACGTGTACTTGTTCGA 3713 ||||||| ||| |||| |||| ||| ||| |||| | | ||||| |||||| |||| Sbjct 517 GCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGC 459 Query 3714 ACTGATAACTATGATGAAATCTTCCAGTCTATGCAACTTGCACACTGGAACATGCAAACT 3773 || | ||||| | |||||||| | || | || ||||| | || | Sbjct 458 CACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTT 399 Query 3774 AAATTTAACACTACTGTATATCGTCATATGCCTACCACTCGTGATGGCATCATGA---CG 3830 |||||||| || || ||||| || |||| |||||||| ||| ||||||| || Sbjct 398 AAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCG 339 Query 3831 TCATAAAA---------------CAAAACGTTGAACGGGTACAAATTTTAATTTGTGCCT 3875 | |||||| | |||| ||| |||| |||||||||||| |||| Sbjct 338 TGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCG 279 Query 3876 GTTCAAGGTTGAACAAGCGAAGCGCGTTAGCTAACTTACTTAAGGAAATT-CTCATGTTT 3934 | |||||| ||||||||||||| ||| | | ||| |||| || |||||||| Sbjct 278 CTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTT-AGGAGTTTAATCATGTTT 220 Query 3935 CAAACTTATCTCTCTAAACATAATTC 3960 || |||| | | ||| |||||||| Sbjct 219 CAGACTTTTATTTCTCGCCATAATTC 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17438602463070