Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021569.1 Length=7069 Score E Sequences producing significant alignments: (Bits) Value seq153 1254 0.0 >seq153 Length=135117 Score = 1254 bits (1390), Expect = 0.0 Identities = 1162/1482 (78%), Gaps = 17/1482 (1%) Strand=Plus/Minus Query 1052 CGCAATGGTCGGTGATCGCGCGGTGCCGGCCGGGTCGGGACTCCCCTCGTCTAACAGGGG 1111 ||| |||| || ||| |||||||||| || || |||||||||||||||||||||||||| Sbjct 7514 CGCCATGGCCGTTGAACGCGCGGTGCTGGAGGGCTCGGGACTCCCCTCGTCTAACAGGGG 7455 Query 1112 AGTCAGTGAATTCAGGAACCCCGAGGGAACCCTGACGGTCGGCATTGATTGGTTCTCCGC 1171 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 7454 AGTCAGTGAATTCAGGAACGAGACGGGAACCCTGACGGTCGGCATTGACTGGTTCTCCGC 7395 Query 1172 TTCCATCGATCTGCGCGCAGCGCTGGACGAGGTCGCATTCCGTGATGGCGACAGTTTCG- 1230 ||| | ||||| ||| || || ||||||| ||| || || || | || Sbjct 7394 TTCGGTAGATCTTTTCGCCGCCCTTCGGGAGGTCGACTTCACCGAAGGTGAGA----CGC 7339 Query 1231 AAGAGG---TCCGCCAGTGGATCGAGTTCTCCCCGGAAAACGCACGTGTTGCGGCCCTGC 1287 |||||| | || ||||||||||| | |||||||||| || || |||||||| | Sbjct 7338 AAGAGGAAATGCGGCAGTGGATCGACGCTAGCGCGGAAAACGCCCGCGTCGCGGCCCTAC 7279 Query 1288 AGGTGTTCTGCTGGTTCTTCGCTGGGCTGGGCCTTGAACTGGATGAAGCAGCAGGCGGCG 1347 |||||||||||||||||||||| |||||||||||||| |||| ||||| |||| | Sbjct 7278 AGGTGTTCTGCTGGTTCTTCGCCGGGCTGGGCCTTGAGTTGGACCTGGCAGCGAGCGGTG 7219 Query 1348 GTCGCTTCTACATGTGGCGAATCAAGATCATCGACGCGGCCAAGAAGTTCGTCGGGATGA 1407 ||||||||||| ||||||| | |||||| || | || || || |||||||||| |||| Sbjct 7218 GTCGCTTCTACCTGTGGCGCGTAAAGATCCTCAATGCCGCAAAAGAGTTCGTCGGCATGA 7159 Query 1408 TCGAACTGGGCGGCGAAAAGTGCCGCCGCGCCGATGGCACATATACCGCCCGCATCGAGC 1467 |||| |||||||| ||| ||||||| || || ||||| || |||||||| ||||||||| Sbjct 7158 TCGAGCTGGGCGGAGAAGAGTGCCGGCGTGCGGATGGAACCTATACCGCACGCATCGAGT 7099 Query 1468 TAACCGGTGATGGATGCAAAGCGATAGGCGCAGCGCGCTGCGGCCATGCGCAGCGGTGGC 1527 | ||||| |||||||| | | |||||||||||||||||||||||| ||||||||| Sbjct 7098 TGACCGGCACCGGATGCAAGTCCGTTGGCGCAGCGCGCTGCGGCCATGCGAAGCGGTGGC 7039 Query 1528 TGGAGCTTCGAGCGAAGCTCGAAAGCTGCGCCGGAAGGATCACCCGCGTCGACGTGTGCG 1587 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 7038 TGGAGCTTCGAGCGAAGCTCGAAAGCTGCGCCGGAAGGATCACCCGTGTTGACGTGTGCG 6979 Query 1588 CAGATGATCTGATCGGTGAATACCCATTGCGCCTGGCGCAGAAGTGGTACGCAGCTGGTG 1647 | ||||| ||||||| || ||||| ||||||||||| || |||||||| || | ||||| Sbjct 6978 CTGATGACTTGATCGGCGACTACCCGTTGCGCCTGGCTCAAAAGTGGTATGCCGATGGTG 6919 Query 1648 AGTTCGATAACCGTGGCCAGCGCCCTAAGGCGCAGCTGGTGGACGACTACGACAGCGGCG 1707 ||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| |||| Sbjct 6918 AGTTCGACAACCGTGGACAGCGCCCTAAAGCGCAGCTGGTTGACGACTACGACAGTGGCG 6859 Query 1708 ACGGCAAGACGCTCTACATCGGCGGCAAGAAGTCGGAGAAGCAGCTGCGTGTGTATGAGA 1767 |||||||||||||||| | ||||| ||||||||||| ||||||||||| || || |||| Sbjct 6858 ACGGCAAGACGCTCTATGTGGGCGGGAAGAAGTCGGAAAAGCAGCTGCGCGTCTACGAGA 6799 Query 1768 AGGGCAGAGAGCAGGGCGACAAGAGCTCTCCGTGGGTGCGCTATGAGGCTCAGTTCCGCA 1827 ||||||| |||||||||||||||| ||| || ||||| |||||||| || ||||||||| Sbjct 6798 AGGGCAGGGAGCAGGGCGACAAGAACTCACCATGGGTTCGCTATGAAGCGCAGTTCCGCG 6739 Query 1828 ACTCAAACCGCAAGGAACTGCCCCTCGACATTCTGCGGGATCCGGCCTCCTACCTGCTCG 1887 || || || ||||| || || |||||| |||| ||||| || || || |||||||| | Sbjct 6738 CGTCCAATCGGAAGGAGCTTCCTCTCGACGTTCTTCGGGACCCTGCGTCATACCTGCTGG 6679 Query 1888 GCGCCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCGCATCGAAATCACGAAAG 1947 |||| ||| || |||||||| || ||||||| Sbjct 6678 GCGCGTATCCGGTCTTGAACTTTCTGCATTGCGTGGCAACACGCATCGACATTACGAAAG 6619 Query 1948 CCGCTGTCGAGGCCACGTGGAAGAGCGTACGTCGCCATATCCGCCGCCAGTACGGCGCGG 2007 |||| || ||||| || |||||||||| || | || | ||||||||||||||||| Sbjct 6618 CCGCGGTGGAGGCGACCTGGAAGAGCGCGCGCAGACACTTGCGCCGCCAGTACGGCGCCA 6559 Query 2008 CCCTCAATTTCATCGCCAAGAACTGCCCAGACGATCAGGCATTGCGGGCGGTAATCGAAT 2067 |||| ||||||| | |||||||| |||| | || | ||| ||| || || ||| Sbjct 6558 CCCTGGCTTTCATCAGCCGCAACTGCCCTGACGCTGAGTCGTTGAAGGCAGTCATTGAAA 6499 Query 2068 CCTGCACTTCGCCATCGCTGCCGAAGTGGGTAACAGGTGACACAGCAGCGCATTGGCCCG 2127 ||||||| |||||| |||||||| ||||| |||||| || |||||||||| ||||||| Sbjct 6498 CCTGCACCTCGCCAAAGCTGCCGAGGTGGGCAACAGGAGAAACAGCAGCGCTATGGCCCG 6439 Query 2128 AAATCGCGGCCGTACAACCAACCTCAAAGGGGTAATGAAATG---------ATCAAGGTC 2178 ||||||||| |||| | | |||||||||||||||| | |||| ||||||||| Sbjct 6438 AAATCGCGGGCGTAAACCAAACCTCAAAGGGGTAACGCAATGGACAACATCATCAAGGTC 6379 Query 2179 ATCGTACTGGATTCGCAGATCAACGAGCGTGGCGGCAGCTTCACCAACGACCGCAACGAG 2238 | ||| ||||||||||||||| | ||||||||||||| |||| |||||||||||||| Sbjct 6378 ACCGTGCTGGATTCGCAGATCGATGAGCGTGGCGGCACGTTCAAGAACGACCGCAACGAA 6319 Query 2239 AACGTTGAATTCACCACCCGCAAGCAGCGCGCCAAGCTGGAGGCGGACGGTTTCGCCTAT 2298 |||| | | || ||||||||||||| | ||||||||| | | ||| ||||| || Sbjct 6318 GACGTCAAGTACAGCACCCGCAAGCAGAAGGGCAAGCTGGAAACCGGCGGCTTCGCGTAC 6259 Query 2299 CCGTTCGACGTGCGCCTGGACAAGGGTCAGTCGGGCTATCCGGCGGGCGAGTACGAGCTC 2358 || ||||| |||||||||||||| || ||| | | || | | |||||| ||||| || Sbjct 6258 CCCTTCGATGTGCGCCTGGACAACGGCCAGCCCGCTTACGCCGTGGGCGAATACGAACTG 6199 Query 2359 GACGTCCCGGCCATGCTGCAGGTCAATAAGGGCGTTGCAACCCTGAGCAAGTTCACGATC 2418 ||||| | |||||| |||||||| |||||||||| ||||||||||||||||| | Sbjct 6198 GACGTTGCCGCCATGGCCCAGGTCAACAAGGGCGTTGTCACCCTGAGCAAGTTCACCGTT 6139 Query 2419 CTGCGCCCGCTGCAGAAGGCTGCGCCGCGCCCGGCAGCGCAGGCCTAAGTCATGGCCGTG 2478 |||||| |||| ||| | || |||||| |||| || ||||| | ||| || || Sbjct 6138 TTGCGCCAGCTGGGCAAGCCCGCACCGCGCTCGGCCTCGGCGGCCTGATCTATGTCCCTG 6079 Query 2479 TGCGTGTCTCTGACGGCTGAGGGGACGCTTGTACCCACCGGG 2520 ||||| | ||| ||| || || ||||| || ||||||||| Sbjct 6078 TGCGTATTCCTGCAGGCAGACGGCACGCTGGTCCCCACCGGG 6037 Score = 154 bits (170), Expect = 7e-34 Identities = 170/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 5940 CCGAATTCGGCGTGTTACTGAGCGCTAAGGGGCATGAGATTATCGCCACGACTTGGCCCG 5999 |||||| | |||| | ||| || ||||| | ||||| |||||||| ||||||||| Sbjct 9986 CCGAATAC--CGTGATCCTGTCGGCCAAGGGAAACGAGATCATCGCCACCTCTTGGCCCG 9929 Query 6000 TGGACCCGTTTGGCGAGCAGTCCGATGCTACGACCGCGCGCATAAAGGCTGCGGCGGGGT 6059 | || |||||||||||||| || | || ||||| ||||| | ||| |||||| | Sbjct 9928 TTGATCCGTTTGGCGAGCAATCTGCCAACACCACCGCTCGCATCAGGGCGGCGGCG---T 9872 Query 6060 CGCCTGTGACGAGCGCGAGCGAGACACAGCCGACCACCGCCGCG-GCGAACGGGAGCACC 6118 |||||||||||||||||||||||||||||||||| |||||||| || || || ||| Sbjct 9871 CGCCTGTGACGAGCGCGAGCGAGACACAGCCGACGACCGCCGCCAGCACCCGCGA-CACG 9813 Query 6119 CTAATTGCAGTTGGGAAGCGCCCCTTGGGCACGTTCCCAGAG 6160 ||||| | || || | || || | ||||||||||||||| Sbjct 9812 ATAATTTCTGTCGGCAGTCGTCCTGTCGGCACGTTCCCAGAG 9771 Score = 104 bits (114), Expect = 1e-18 Identities = 229/338 (68%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 6365 GGCGCTGAGCCGCTGAAATGCCAGCAACACCTTGATCCGCGCATCCGGCTCTATTGCGCG 6424 ||||| ||| ||||| ||| | || ||| |||||| || ||| || |||| Sbjct 9542 GGCGCAACGCCTCTGAAGTGCGATCAGCACGCTGATCCTCGGTACCGTCTGCTTTGCAAC 9483 Query 6425 GAAATTGAGCGATCCCTGATACAGGGCGAGGCGCGTCGCCAAGGGTTACCAACGCCATCG 6484 || ||||||| ||| | || || |||| || || ||| | || | ||||||| Sbjct 9482 GACATTGAGCACGCCCATGTTCAAGGTATGGCGAAACGACAGGGGCTTCCTATGCCATCG 9423 Query 6485 AGCGAGATTGT-TCGCATGCCAGCCTACGGGAGCGCCGAGGCAAAGCAGCTGGGCGCTGC 6543 || | | |||| |||| | |||||||| | || ||| ||| || || || Sbjct 9422 GCGGACGTCATCTCGC-TGCCGTCGATGGGGAGCGCTGGTGCCAAGGCGCTTGGTGCGGC 9364 Query 6544 CTGTATGGGGGGCACCGCAATGCGCCGCCTAAACAACGGCTGGGAACAGTTGCGAAACGC 6603 || || || |||||||||||||| || || || |||||||| ||| |||| |||| Sbjct 9363 GTGCATCGGTGGCACCGCAATGCGGCGTCTGCCGAATGGCTGGGAGCAGCTGCGGGACGC 9304 Query 6604 CAAGGGCGAATGGCTGCGCTGCCGTGAGCACTGAACCGGGGTGTAGGGGCAGCGCCCCTA 6663 |||| | |||| ||| ||||| ||||| || | ||||||||||||| ||||||| Sbjct 9303 TCAGGGGAATTGGCGGCGGTGCCGCGAGCAGTG-ATTGGGGTGTAGGGGCCAAGCCCCTA 9245 Query 6664 CGG-AAGCGCCTCACACGCGCTGGTAAGGTCTCGGCCC 6700 ||| | ||| | | |||||| | ||| |||||| Sbjct 9244 CGGCCAACGCTTTATCCGCGCTTGGGGCGTCGCGGCCC 9207 Score = 102 bits (112), Expect = 4e-18 Identities = 128/172 (74%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 6515 AGCGCCGAGGCAAAGCAGCTGGGCGCTGCCTGTATGGGGGGCACCGCAATGCGCCGCCTA 6574 ||| | || || |||| ||||||| || ||||| || || || || ||||| || || Sbjct 2552 AGCCCGGAAGCCAAGCGATTGGGCGCCGCTTGTATTGGCGGTACGGCCATGCGACGGCTC 2493 Query 6575 AACAACGGCTGGGAACAGTTGCGAAACGCC-AAGGGCGAATGGCTGCGCTGCCGTGAGCA 6633 | ||| || ||||| || | | ||||| |||||| | ||| | |||||||| ||||| Sbjct 2492 AGCAATGGATGGGAGCAACTCAGGAACGCTGAAGGGC-ATTGGATACGCTGCCGCGAGCA 2434 Query 6634 CTGAACCGGGGTGTAGGGGCAGCGCCCCTACGG-AAGCGCCTCACACGCGCT 6684 ||| | |||||||||||||| |||||||||| | ||||| | |||||| Sbjct 2433 GTGACCTGGGGTGTAGGGGCATTGCCCCTACGGTCAACGCCTTATCCGCGCT 2382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22502985327524