Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq64 318 3e-83 seq2081 187 1e-43 seq2082 109 3e-20 seq2947 89.7 3e-14 >seq64 Length=260832 Score = 318 bits (352), Expect = 3e-83 Identities = 624/900 (69%), Gaps = 28/900 (3%) Strand=Plus/Plus Query 6546 GTCGCCCGCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGT 6605 |||||| |||| |||||||||||| ||| || |||||||| | ||| |||| Sbjct 61816 GTCGCC-GCGC--CATCCACAGATTCGACAGCGCGAACAGCGTCAACACCTGCGCCGTGT 61872 Query 6606 TCTTTATCAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGA 6665 |||| ||| || |||||||||||| | || || ||||| ||||| | ||||||| Sbjct 61873 TCTTCGCCAACCCGCGATAGCGCACCTTGGTGTAACCGAACTGCCGCTTCACCACTCGGA 61932 Query 6666 ACGGATGTTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGACGAGCG 6725 ||||||| ||||| || || | || ||||||| ||||| || || ||| Sbjct 61933 ACGGATGCTCCACCTTCGCCCGCAGGCTGGCCTTGAAGTGCTCC----CAGCGTTCGGCG 61988 Query 6726 CACC--CGA-CACGGTGCTCTTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACAT 6782 | ||| |||| | | || | || || || | || ||| | | | || Sbjct 61989 TATTTGCGATCACGCT--TGTTCTTCATCGCACGAAGCTTCGACGGC--TTCTCCGCGAT 62044 Query 6783 GCC-AACGCACCTTCAACTCCT-GCACCTCTTCGCGCTTGTCGATGCCCTGATAGCCGGC 6840 | |||||| | || || ||| ||| ||| ||||||||||| |||| |||||| Sbjct 62045 CCAGAACGCAGCCTCCACGCCTTGCAGCTCCTCGCGCTTGTCCGCGCCCGTGTAGCCGCT 62104 Query 6841 ATCGCCGAACACGTCGGCCTCCTTGCCATGCACCAATGCGT-TGCGCTGGCGTCACGTCG 6899 |||||| | | | | |||||||| |||| || || | ||| | ||||||||||| Sbjct 62105 GTCGCCGCAGATTGTGTCTTCCTTGCCGTGCAGCA--GCTTGTGCACCTGCGTCACGTCG 62162 Query 6900 TTGACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCA 6959 |||||||| || ||||||| | | ||| ||||||||| ||||| ||| | ||||| ||| Sbjct 62163 TTGACGTTCGCCGCCGTGCACTCCACGTGGTGCACCAGGCCCGACTCCTCGTCCACGCCA 62222 Query 6960 ATGTGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGG 7019 |||||||| ||||| ||||| ||||||||||| || ||||| |||||||||||||| || Sbjct 62223 ATGTGCGCCTTCATCCCGAAGTGCCACTGGTTGCCCTTCTTCGTCTGGTGCATCTCCGGA 62282 Query 7020 TCACGCTTGCCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACC 7079 || ||||||||| | |||||||||||||| ||||| || || | || |||||| || Sbjct 62283 TCGCGCTTGCCGTCCCTGTTCTTGGTCGAACTCGGCGCCGCGATGATCGTGGCGTCCACG 62342 Query 7080 ACCGTGCACGTCTTTGAGCAGGTAGCCCTT-CGCACTGAGTTGCGCGTTGACGGTCTGCA 7138 | ||||| | ||| ||| | |||||| ||| | || |||||||| ||| || || Sbjct 62343 ATCGTGCCGGCCTTCAAGC-TCTGGCCCTTGCGCGC-CAGGTGCGCGTTCACGCGCTCCA 62400 Query 7139 GAAATTGCTCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCC 7198 | | ||| || | | || |||||||| | || |||| | || || | Sbjct 62401 GGAGCTGCGGCGCCAGATCATGCGTCTCCAGCAGCCGGCGGAAGCTGAAGATCGTGGTCT 62460 Query 7199 GGTCCGGCA-GTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCG 7257 |||||| | || | | | || | || | ||||| | || || || | |||| Sbjct 62461 CGTCCGGAATGTTGTC-CAGCCCGCTGAGGCGGGCGAAGCGGCGCATCACCGCCGTGTCG 62519 Query 7258 TACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATG 7317 ||||||||||||||||| ||| ||| | ||| || |||| |||||||| ||||||||| Sbjct 62520 TACAGCGCCTCTTCCATGGCCGGGTCACTGAGCGCGTACCACTGCTGCAGGAAGTGGATG 62579 Query 7318 CGCAGCATCGTTTCGACTGGAAACGGCTTCCGACC-CGTCG--CCTTGACCGGCGCATGC 7374 ||||||||||| | | | |||||| ||| || || | || | ||| ||| Sbjct 62580 CGCAGCATCGTCGCCAGCGCGTACGGCTGCCGGCCACGCTGGCCCATCTTCGGGTAGTGC 62639 Query 7375 GGCGCTATCAACGCCAAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAA 7434 || || |||| |||| | || || | ||||||||| || | |||||||| |||| || Sbjct 62640 GGTGCGATCAGCGCC-AGCAATGCGTTCCACGGCACAACCTGCTCCATCTCCGCCAGGAA 62698 >seq2081 Length=1194 Score = 187 bits (206), Expect = 1e-43 Identities = 602/910 (66%), Gaps = 32/910 (4%) Strand=Plus/Minus Query 6553 GCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCTTTAT 6612 |||| ||||||||| || ||| || ||||| || | |||| ||||| || Sbjct 1006 GCGCGCCATCCACAGGTTCGACAGAGCGAACAGTGTCACCAGTTGCGCCGTGTTTTTGGC 947 Query 6613 CAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACGGATG 6672 |||||| ||| |||||||| | || || |||||||||||||| || ||||||||||| Sbjct 946 CAAGCCGCGAAAGCGCACCTTGGTGTAACCGAACTGGCGCTTGATTACCCGGAACGGATG 887 Query 6673 TTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGACGAGC---GCACC 6729 || || ||| || | | |||||| || || | || || || | || Sbjct 886 CTCGACCTTGGCGCGCACCTGAGCCTTGGCCTTTTCAATCTTG-CGCTTGGCTTTGTACA 828 Query 6730 CGACACGGTGCTCTTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACATGCCAACG 6789 |||| ||| ||| || | | ||| ||||| ||||| ||||| Sbjct 827 G--CACGCTGCGCTTATCGAGTTTTTTGTAGGTGCTGCGGCGTGCCGCCACCTGCCAGAT 770 Query 6790 CACCTTCAACTCCTGCAC-CTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGA 6848 || |||| |||| || ||| ||||| |||| || ||||| |||||| || Sbjct 769 AAC-TTCACGTCCTTCATGCTCGGGCCGCTTTTCGACACCGGTGTAGCCTGCATCGGCGC 711 Query 6849 ACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTG 6908 | || || || | |||||||| |||| || |||| || || || || ||| Sbjct 710 AGACCACGTTTTCGTCGCCATGCAGCAATTTGTCCACCTGG-GTGACATCCGCCACATTG 652 Query 6909 GCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCT 6968 || ||||||||||||||| |||||||||| ||||| || |||| | || ||||| || Sbjct 651 GCCGCCGTGCCCACTACGCTGTGCACCAGACCCGATTCGTCATCGGCGCCGATGTGGGCC 592 Query 6969 TTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTG 7028 |||||||| |||| ||||||| || ||||||||||||||||| || ||||| |||||| Sbjct 591 TTCATGCCAAAATAATACTGGTTTCCCTTCTTGGTCTGGTGCATTTCCGGGTCGCGCTTG 532 Query 7029 CCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCAC 7088 ||| |||||||||||||||||||| ||||||| || ||||| | |||| | Sbjct 531 CCGTCCTTGTTCTTGGTCGAACTGGGCGCATTGATCAGCGTTGCATCGACGATGGTGCCC 472 Query 7089 -GTCTTTGAG-CAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGC 7146 | | | | |||| | | |||| | || | || | |||| | | || || ||| Sbjct 471 TGGCGCAGCGACAGGCCG-CGGTCGCCCAGA-TAGC-CATTGA-TGACAGC-GAGGATGC 417 Query 7147 --TCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCG 7204 | || | || |||| |||||||||| | || ||| |||||| || ||| | Sbjct 416 CGGCCGCCAGCTCGTGTTTCTCCAGCAAGCGGCGGAAGTTGAGAATGGTGGTTTCGTCGG 357 Query 7205 GCAGTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCG 7264 | | | ||| | | |||||| || || || || | || |||||||||| Sbjct 356 GGA-TGCGCTCCAGGTT--CAGCCCGGCAAACTGGCGCAGGATCGTGGTTTCGTACAGCG 300 Query 7265 CCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCA 7324 | || |||||||| || | |||||||| | |||||| | || | ||||||| Sbjct 299 CTTCCTCCATCGCTGGATCGCTGTAGCCGAACCAGTTCTGCAGCAGATGCACACGCAGCA 240 Query 7325 TCG-TTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGAC----CGGCGCATGCGGCGC 7379 ||| || || || | || ||| | | | |||| || ||| ||| ||| | Sbjct 239 TCGCCATCAACGGGTA--GG---CCGGACGGCCACCTTCACCTTTCGGATAATGTGGCTC 185 Query 7380 TATCAACGCCAAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCT 7439 ||||| | ||| || ||| |||||||||||| || |||||||| ||| || | || Sbjct 184 GATCAAAG-CAATCAAGCCCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAACT 126 Query 7440 GCTTGCGCGT 7449 |||||| || Sbjct 125 CCTTGCGGGT 116 >seq2082 Length=493 Score = 109 bits (120), Expect = 3e-20 Identities = 315/475 (66%), Gaps = 25/475 (5%) Strand=Plus/Plus Query 6985 ACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGG 7044 |||||||||| ||||||||||| ||||| || ||||| ||||| ||| ||||||| Sbjct 4 ACTGGTTACCCTTCTTGGTCTGATGCATTTCCGGGTCGCGCTTACCGTCCTTGTTCTTGG 63 Query 7045 TCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCACGTCTTTGAGCA--GGT 7102 ||||||| ||||| ||||||| ||| ||||| | ||||| ||| | ||| | Sbjct 64 TCGAACTCGGCGCATTGATCAGCGTGGCATCGACGATCGTGC----CTTGGCGCAGCGAC 119 Query 7103 AGCCCT---TCGCACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGC-TCGGCTAACTGG 7158 |||||| |||| | || | || | |||| | | || | || | |||||| | | Sbjct 120 AGCCCTCGGTCGCCCAGA-TAGC-CATTGA-TGACAGCCAAGATGCCGGCGGCTAGTTCG 176 Query 7159 TGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATG 7218 || ||||||||| | || ||| || ||| || || || | || | | Sbjct 177 TGCTTCTCCAGCAAACGACGGAAGTTGAGGATGGTGGTTTCATCGGGGATACGCTCCAAG 236 Query 7219 CCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCC 7278 | |||||||||||| || || | | ||||||||||||||||||||||| Sbjct 237 ---CTCAGCCCCGCGAACTGGCGCAGGATGGTGGTCTCGTACAGCGCCTCTTCCATCGCT 293 Query 7279 ACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGA 7338 || | |||||||| | |||| | ||| | ||||||||||| | ||| Sbjct 294 GGATCGCTGTAACCGAACCAGTTTTGCATCAGGTGCACGCGCAGCATCGCCATCAGCGGA 353 Query 7339 AACGGCTTCCGACCCGTCGCCTTGACC----GGCGCATGCGGCGCTATCAACGCCAAAAA 7394 | | | |||| |||||| ||| || ||||||| | ||||| || | || Sbjct 354 TAGGCCGGACGAC----CGCCTTCACCCTTGGGATAATGCGGCTCGATCAAGGCAATCAA 409 Query 7395 ACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCTGCTTGCGCGT 7449 || ||| |||||||||||| || |||||||| ||| || | || ||||| || Sbjct 410 AC-CCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAACTCTTTGCGGGT 463 >seq2947 Length=1070 Score = 89.7 bits (98), Expect = 3e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 6903 ACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATG 6962 |||||||| ||||||||||| ||| ||||||||| ||||| || |||| ||||| ||| Sbjct 79 ACGTTGGCCGCCGTGCCCACCACGCTGTGCACCAAGCCCGACTCATCATCGACACCGATG 20 Query 6963 TGCGCTTTCATGCCGAA 6979 ||||| ||||||||||| Sbjct 19 TGCGCCTTCATGCCGAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27324825067120