Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq13277 670 0.0 seq3659 623 4e-175 >seq13277 Length=371 Score = 670 bits (742), Expect = 0.0 Identities = 371/371 (100%), Gaps = 0/371 (0%) Strand=Plus/Minus Query 4039 TCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAA 4098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 TCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAA 312 Query 4099 TGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTTGGAAGAGATTCTGTCTT 4158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 TGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTTGGAAGAGATTCTGTCTT 252 Query 4159 TTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTG 4218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 251 TTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTG 192 Query 4219 CTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCAC 4278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 CTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCAC 132 Query 4279 AATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAG 4338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 AATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAG 72 Query 4339 GGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGG 4398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 GGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGG 12 Query 4399 CTGCTGAACGC 4409 ||||||||||| Sbjct 11 CTGCTGAACGC 1 >seq3659 Length=607 Score = 623 bits (690), Expect = 4e-175 Identities = 347/348 (99%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 3059 TACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAA 3118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 TACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAA 548 Query 3119 CCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACT 3178 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 CCCTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACT 488 Query 3179 TCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGT 3238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 TCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGT 428 Query 3239 TGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGC 3298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 TGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGC 368 Query 3299 TGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTAT 3358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 TGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTAT 308 Query 3359 GGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACT 3406 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 GGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACT 260 Score = 354 bits (392), Expect = 3e-94 Identities = 196/196 (100%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 3470 GTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGC 3529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 GTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGC 137 Query 3530 TTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTC 3589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 TTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTC 77 Query 3590 CAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGG 3649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 CAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGG 17 Query 3650 TCAGTATTTTACCAAT 3665 |||||||||||||||| Sbjct 16 TCAGTATTTTACCAAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17120693752130