Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_015586.1 Length=5819 Score E Sequences producing significant alignments: (Bits) Value seq7369 470 5e-129 seq9127 228 3e-56 seq2313 96.9 1e-16 >seq7369 Length=378 Score = 470 bits (520), Expect = 5e-129 Identities = 331/378 (88%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 449 GCTGCGGCCATGCGCAGCGGTGGCTGGAGCTTCGAGCGAAGCTCGAAAGCTGCGCCGGGA 508 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 GCTGCGGCCATGCGAAGCGGTGGCTGGAGCTTCGAGCGAAGCTCGAAAGCTGCGCCGGAA 60 Query 509 GGATCACCCGTGTCGATGTGTGCGCCGATGACCTGGTGGGCGATTACCCGTTGCGCATGG 568 ||||||||||||| || |||||||| |||||| || | ||||| |||||||||||| ||| Sbjct 61 GGATCACCCGTGTTGACGTGTGCGCTGATGACTTGATCGGCGACTACCCGTTGCGCCTGG 120 Query 569 CACAGAAGTGGTACGCCAATGGCGACTTCGACAACCGTGGTCAGCGCCCCAAGGCGCAGC 628 | || |||||||| ||| |||| || |||||||||||||| |||||||| || ||||||| Sbjct 121 CTCAAAAGTGGTATGCCGATGGTGAGTTCGACAACCGTGGACAGCGCCCTAAAGCGCAGC 180 Query 629 TGGTGGACGACTACGACAGCGGCGACGGCAAGACGTTCTATGTGGGCGGCAAGAAGTCGG 688 |||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| Sbjct 181 TGGTTGACGACTACGACAGTGGCGACGGCAAGACGCTCTATGTGGGCGGGAAGAAGTCGG 240 Query 689 AGAAGCAACTGCGCGTCTACGAGAAGGGCAGGGAACAAGGCGACAAGAGTTCGCCGTGGG 748 | ||||| |||||||||||||||||||||||||| || |||||||||| || || |||| Sbjct 241 AAAAGCAGCTGCGCGTCTACGAGAAGGGCAGGGAGCAGGGCGACAAGAACTCACCATGGG 300 Query 749 TGCGCTATGAGGCGCAGTTCCGCAACTCCAATCGCAAGGAACTGCCGCTCGACATTCTGC 808 | |||||||| |||||||||||| |||||||| ||||| || || |||||| |||| | Sbjct 301 TTCGCTATGAAGCGCAGTTCCGCGCGTCCAATCGGAAGGAGCTTCCTCTCGACGTTCTTC 360 Query 809 GTGATCCGGCCTCCTACC 826 | || || || || |||| Sbjct 361 GGGACCCTGCGTCATACC 378 >seq9127 Length=920 Score = 228 bits (252), Expect = 3e-56 Identities = 214/270 (79%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 1 ATGGTCGGTGATCGCGCGGTGCTGGCCGGGTCGGGACTCCCCTCGTCTAACAGGGGAGTC 60 |||| || ||| |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 266 ATGGCCGTTGAACGCGCGGTGCTGGCGGGCTCGGGACTCCCCTCGTCTAACAGGGGAGTC 207 Query 61 AGTGAATTCAGGAACCCCGAGGGAACCCTGACGGTCGGCATTGACTGGTTCTCCGCTTCC 120 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 206 AGTGAATTCAGGAACGAGACGGGAACCCTGACGGTCGGCATTGACTGGTTCTCCGCTTCG 147 Query 121 ATCGATCTGCGCGCAGCGCTGGACGAGGTTGCGTTCCGTGATGGCGACAGTTTCG-AAGA 179 | ||||| ||| || || ||||| | ||| || || || | || |||| Sbjct 146 GTAGATCTTTTCGCCGCCCTTCGGGAGGTCGACTTCACCGAAGGTGAGA----CGCAAGA 91 Query 180 GG---TCCGCCAGTGGATCGAGTTCTCCCCGGACAATGCCCGCATTGCGGCCTTGCAGGT 236 || | || ||||||||||| | |||| || |||||| | |||||| | ||||| Sbjct 90 GGAAATGCGGCAGTGGATCGACGCTAGCGCGGAAAACGCCCGCGTCGCGGCCCTACAGGT 31 Query 237 GTTCTGCTGGTTCTTCGCCGGTCTGGGTCT 266 ||||||||||||||||||||| ||||| || Sbjct 30 GTTCTGCTGGTTCTTCGCCGGGCTGGGCCT 1 >seq2313 Length=1558 Score = 96.9 bits (106), Expect = 1e-16 Identities = 121/158 (77%), Gaps = 10/158 (6%) Strand=Plus/Plus Query 4680 CGCGGCCG--CT--CTCCATCATCCGCCGCCATTCCTGCGCC-TGC-GCAGCAGTGAGCG 4733 |||||||| || |||||||||| ||||||||||| |||| || |||| || |||| Sbjct 303 CGCGGCCGGGCTTCCTCCATCATCAGCCGCCATTCCCGCGCGATGTTGCAG--GTCAGCG 360 Query 4734 ACAGCCAGGCCAGATCTTCGGGCAGCAACTC-GCGGCCTTCGGGTGTGACCAGTCGGCCA 4792 || |||||||| ||| | ||| ||| | | ||| || ||||||| || |||| Sbjct 361 ACCACCAGGCCATATCGACAGGCT-CAAGGCTGTAGCCCTCAGGTGTGAACATGTGGCCG 419 Query 4793 GCCTTAAACGAAAAACCGGCCCAAGGGCCGGTTAGGTT 4830 |||| ||| ||||||||||||||||||||||||||| Sbjct 420 GCCTGAAAGCCAAAACCGGCCCAAGGGCCGGTTAGGTT 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18506090947920