Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021569.1 Length=7069 Score E Sequences producing significant alignments: (Bits) Value seq7369 461 3e-126 seq9127 241 6e-60 seq5905 154 7e-34 seq2313 80.6 1e-11 >seq7369 Length=378 Score = 461 bits (510), Expect = 3e-126 Identities = 329/378 (87%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 1504 GCTGCGGCCATGCGCAGCGGTGGCTGGAGCTTCGAGCGAAGCTCGAAAGCTGCGCCGGAA 1563 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCTGCGGCCATGCGAAGCGGTGGCTGGAGCTTCGAGCGAAGCTCGAAAGCTGCGCCGGAA 60 Query 1564 GGATCACCCGCGTCGACGTGTGCGCAGATGATCTGATCGGTGAATACCCATTGCGCCTGG 1623 |||||||||| || ||||||||||| ||||| ||||||| || ||||| |||||||||| Sbjct 61 GGATCACCCGTGTTGACGTGTGCGCTGATGACTTGATCGGCGACTACCCGTTGCGCCTGG 120 Query 1624 CGCAGAAGTGGTACGCAGCTGGTGAGTTCGATAACCGTGGCCAGCGCCCTAAGGCGCAGC 1683 | || |||||||| || | |||||||||||| |||||||| ||||||||||| ||||||| Sbjct 121 CTCAAAAGTGGTATGCCGATGGTGAGTTCGACAACCGTGGACAGCGCCCTAAAGCGCAGC 180 Query 1684 TGGTGGACGACTACGACAGCGGCGACGGCAAGACGCTCTACATCGGCGGCAAGAAGTCGG 1743 |||| |||||||||||||| |||||||||||||||||||| | ||||| |||||||||| Sbjct 181 TGGTTGACGACTACGACAGTGGCGACGGCAAGACGCTCTATGTGGGCGGGAAGAAGTCGG 240 Query 1744 AGAAGCAGCTGCGTGTGTATGAGAAGGGCAGAGAGCAGGGCGACAAGAGCTCTCCGTGGG 1803 | ||||||||||| || || ||||||||||| |||||||||||||||| ||| || |||| Sbjct 241 AAAAGCAGCTGCGCGTCTACGAGAAGGGCAGGGAGCAGGGCGACAAGAACTCACCATGGG 300 Query 1804 TGCGCTATGAGGCTCAGTTCCGCAACTCAAACCGCAAGGAACTGCCCCTCGACATTCTGC 1863 | |||||||| || ||||||||| || || || ||||| || || |||||| |||| | Sbjct 301 TTCGCTATGAAGCGCAGTTCCGCGCGTCCAATCGGAAGGAGCTTCCTCTCGACGTTCTTC 360 Query 1864 GGGATCCGGCCTCCTACC 1881 |||| || || || |||| Sbjct 361 GGGACCCTGCGTCATACC 378 >seq9127 Length=920 Score = 241 bits (266), Expect = 6e-60 Identities = 219/274 (80%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 1052 CGCAATGGTCGGTGATCGCGCGGTGCCGGCCGGGTCGGGACTCCCCTCGTCTAACAGGGG 1111 ||| |||| || ||| |||||||||| ||| || |||||||||||||||||||||||||| Sbjct 270 CGCCATGGCCGTTGAACGCGCGGTGCTGGCGGGCTCGGGACTCCCCTCGTCTAACAGGGG 211 Query 1112 AGTCAGTGAATTCAGGAACCCCGAGGGAACCCTGACGGTCGGCATTGATTGGTTCTCCGC 1171 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 210 AGTCAGTGAATTCAGGAACGAGACGGGAACCCTGACGGTCGGCATTGACTGGTTCTCCGC 151 Query 1172 TTCCATCGATCTGCGCGCAGCGCTGGACGAGGTCGCATTCCGTGATGGCGACAGTTTCG- 1230 ||| | ||||| ||| || || ||||||| ||| || || || | || Sbjct 150 TTCGGTAGATCTTTTCGCCGCCCTTCGGGAGGTCGACTTCACCGAAGGTGAGA----CGC 95 Query 1231 AAGAGG---TCCGCCAGTGGATCGAGTTCTCCCCGGAAAACGCACGTGTTGCGGCCCTGC 1287 |||||| | || ||||||||||| | |||||||||| || || |||||||| | Sbjct 94 AAGAGGAAATGCGGCAGTGGATCGACGCTAGCGCGGAAAACGCCCGCGTCGCGGCCCTAC 35 Query 1288 AGGTGTTCTGCTGGTTCTTCGCTGGGCTGGGCCT 1321 |||||||||||||||||||||| ||||||||||| Sbjct 34 AGGTGTTCTGCTGGTTCTTCGCCGGGCTGGGCCT 1 >seq5905 Length=864 Score = 154 bits (170), Expect = 7e-34 Identities = 170/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 5940 CCGAATTCGGCGTGTTACTGAGCGCTAAGGGGCATGAGATTATCGCCACGACTTGGCCCG 5999 |||||| | |||| | ||| || ||||| | ||||| |||||||| ||||||||| Sbjct 285 CCGAATAC--CGTGATCCTGTCGGCCAAGGGAAACGAGATCATCGCCACCTCTTGGCCCG 342 Query 6000 TGGACCCGTTTGGCGAGCAGTCCGATGCTACGACCGCGCGCATAAAGGCTGCGGCGGGGT 6059 | || |||||||||||||| || | || ||||| ||||| | ||| |||||| | Sbjct 343 TTGATCCGTTTGGCGAGCAATCTGCCAACACCACCGCTCGCATCAGGGCGGCGGCG---T 399 Query 6060 CGCCTGTGACGAGCGCGAGCGAGACACAGCCGACCACCGCCG-CGGCGAACGGGAGCACC 6118 |||||||||||||||||||||||||||||||||| ||||||| | || || || ||| Sbjct 400 CGCCTGTGACGAGCGCGAGCGAGACACAGCCGACGACCGCCGCCAGCACCCGCGA-CACG 458 Query 6119 CTAATTGCAGTTGGGAAGCGCCCCTTGGGCACGTTCCCAGAG 6160 ||||| | || || | || || | ||||||||||||||| Sbjct 459 ATAATTTCTGTCGGCAGTCGTCCTGTCGGCACGTTCCCAGAG 500 >seq2313 Length=1558 Score = 80.6 bits (88), Expect = 1e-11 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 6557 ACCGCAATGCGCCGCCTAAACAACGGCTGGGAACAGTTGCGAAACGCC-AAGGGCGAATG 6615 || || ||||| || || | ||| || ||||| || | | ||||| |||||| | || Sbjct 1 ACGGCCATGCGACGGCTCAGCAATGGATGGGAGCAACTCAGGAACGCTGAAGGGC-ATTG 59 Query 6616 GCTGCGCTGCCGTGAGCACTGAACCGGGGTGTAGGGGCAGCGCCCCTACGG-AAGCGCCT 6674 | | |||||||| ||||| ||| | |||||||||||||| |||||||||| | ||||| Sbjct 60 GATACGCTGCCGCGAGCAGTGACCTGGGGTGTAGGGGCATTGCCCCTACGGTCAACGCCT 119 Query 6675 CACACGCGCT 6684 | |||||| Sbjct 120 TATCCGCGCT 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22502211838184