Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq1489 187 1e-43 seq1699 163 2e-36 seq1488 111 9e-21 seq145 109 3e-20 seq3960 107 1e-19 >seq1489 Length=1194 Score = 187 bits (206), Expect = 1e-43 Identities = 602/910 (66%), Gaps = 32/910 (4%) Strand=Plus/Plus Query 6553 GCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCTTTAT 6612 |||| ||||||||| || ||| || ||||| || | |||| ||||| || Sbjct 189 GCGCGCCATCCACAGGTTCGACAGAGCGAACAGTGTCACCAGTTGCGCCGTGTTTTTGGC 248 Query 6613 CAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACGGATG 6672 |||||| ||| |||||||| | || || |||||||||||||| || ||||||||||| Sbjct 249 CAAGCCGCGAAAGCGCACCTTGGTGTAACCGAACTGGCGCTTGATTACCCGGAACGGATG 308 Query 6673 TTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGACGAGC---GCACC 6729 || || ||| || | | |||||| || || | || || || | || Sbjct 309 CTCGACCTTGGCGCGCACCTGAGCCTTGGCCTTTTCAATCTTG-CGCTTGGCTTTGTACA 367 Query 6730 CGACACGGTGCTCTTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACATGCCAACG 6789 |||| ||| ||| || | | ||| ||||| ||||| ||||| Sbjct 368 G--CACGCTGCGCTTATCGAGTTTTTTGTAGGTGCTGCGGCGTGCCGCCACCTGCCAGAT 425 Query 6790 CACCTTCAACTCCTGCAC-CTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGA 6848 || |||| |||| || ||| ||||| |||| || ||||| |||||| || Sbjct 426 AAC-TTCACGTCCTTCATGCTCGGGCCGCTTTTCGACACCGGTGTAGCCTGCATCGGCGC 484 Query 6849 ACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTG 6908 | || || || | |||||||| |||| || |||| || || || || ||| Sbjct 485 AGACCACGTTTTCGTCGCCATGCAGCAATTTGTCCACCTGG-GTGACATCCGCCACATTG 543 Query 6909 GCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCT 6968 || ||||||||||||||| |||||||||| ||||| || |||| | || ||||| || Sbjct 544 GCCGCCGTGCCCACTACGCTGTGCACCAGACCCGATTCGTCATCGGCGCCGATGTGGGCC 603 Query 6969 TTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTG 7028 |||||||| |||| ||||||| || ||||||||||||||||| || ||||| |||||| Sbjct 604 TTCATGCCAAAATAATACTGGTTTCCCTTCTTGGTCTGGTGCATTTCCGGGTCGCGCTTG 663 Query 7029 CCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCAC 7088 ||| |||||||||||||||||||| ||||||| || ||||| | |||| | Sbjct 664 CCGTCCTTGTTCTTGGTCGAACTGGGCGCATTGATCAGCGTTGCATCGACGATGGTGCCC 723 Query 7089 -GTCTTTGAG-CAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGC 7146 | | | | |||| | | |||| | || | || | |||| | | || || ||| Sbjct 724 TGGCGCAGCGACAGGCCG-CGGTCGCCCAGA-TAGC-CATTGA-TGACAGC-GAGGATGC 778 Query 7147 --TCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCG 7204 | || | || |||| |||||||||| | || ||| |||||| || ||| | Sbjct 779 CGGCCGCCAGCTCGTGTTTCTCCAGCAAGCGGCGGAAGTTGAGAATGGTGGTTTCGTCGG 838 Query 7205 GCAGTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCG 7264 | | | ||| | | |||||| || || || || | || |||||||||| Sbjct 839 GGA-TGCGCTCCAGGTT--CAGCCCGGCAAACTGGCGCAGGATCGTGGTTTCGTACAGCG 895 Query 7265 CCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCA 7324 | || |||||||| || | |||||||| | |||||| | || | ||||||| Sbjct 896 CTTCCTCCATCGCTGGATCGCTGTAGCCGAACCAGTTCTGCAGCAGATGCACACGCAGCA 955 Query 7325 TCG-TTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGAC----CGGCGCATGCGGCGC 7379 ||| || || || | || ||| | | | |||| || ||| ||| ||| | Sbjct 956 TCGCCATCAACGGGTA--GG---CCGGACGGCCACCTTCACCTTTCGGATAATGTGGCTC 1010 Query 7380 TATCAACGCCAAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCT 7439 ||||| | ||| || ||| |||||||||||| || |||||||| ||| || | || Sbjct 1011 GATCAAAG-CAATCAAGCCCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAACT 1069 Query 7440 GCTTGCGCGT 7449 |||||| || Sbjct 1070 CCTTGCGGGT 1079 >seq1699 Length=1189 Score = 163 bits (180), Expect = 2e-36 Identities = 193/260 (74%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 6827 CCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGC 6886 || ||||||||||| || || ||| | |||| || | ||| |||| || |||| |||| Sbjct 764 CCTTGATAGCCGGCGTCACCAAACGCCGCGGCTTCATCGCCGTGCAGCAGCGCGT-GCGC 706 Query 6887 TGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTC 6946 ||||||||||| || ||| |||||||||| || |||||||||||||| ||||| | Sbjct 705 CTGCGTCACGTCGGCAACATTGCCGGCCGTGCCGACGACGGTGTGCACCAGACCCGACGC 646 Query 6947 CGCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTG 7006 || ||||| || |||||||| ||||| || || ||||| | || ||||| || | ||| Sbjct 645 AGCGTCCACGCCGATGTGCGCCTTCATCCCAAAGTGCCAGTCATTGCCTTTTTTCGACTG 586 Query 7007 GTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAG 7066 |||||| || || || |||||||| ||||| ||||| ||||| || |||| Sbjct 585 GTGCATTTCCGGATCGCGCTTGCCATCCTTGTTCTTCGTCGACGGCGGCGCTGCGATCAA 526 Query 7067 CGAGGCGTCGACCACCGTGC 7086 | |||||| || | |||| Sbjct 525 GGTGGCGTCCACGATGGTGC 506 >seq1488 Length=638 Score = 111 bits (122), Expect = 9e-21 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 6903 ACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATG 6962 |||||||| ||||||||||| ||| ||||||||| ||||| || |||| ||||| ||| Sbjct 538 ACGTTGGCCGCCGTGCCCACCACGCTGTGCACCAAGCCCGACTCATCATCGACACCGATG 597 Query 6963 TGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGT 7003 ||||| ||||||||||| | |||||||||| |||||||| Sbjct 598 TGCGCCTTCATGCCGAAGTAGTACTGGTTACCCTTCTTGGT 638 >seq145 Length=10050 Score = 109 bits (120), Expect = 3e-20 Identities = 315/475 (66%), Gaps = 25/475 (5%) Strand=Plus/Plus Query 6985 ACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGG 7044 |||||||||| ||||||||||| ||||| || ||||| ||||| ||| ||||||| Sbjct 9561 ACTGGTTACCCTTCTTGGTCTGATGCATTTCCGGGTCGCGCTTACCGTCCTTGTTCTTGG 9620 Query 7045 TCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCACGTCTTTGAGCA--GGT 7102 ||||||| ||||| ||||||| ||| ||||| | ||||| ||| | ||| | Sbjct 9621 TCGAACTCGGCGCATTGATCAGCGTGGCATCGACGATCGTGC----CTTGGCGCAGCGAC 9676 Query 7103 AGCCCT---TCGCACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGC-TCGGCTAACTGG 7158 |||||| |||| | || | || | |||| | | || | || | |||||| | | Sbjct 9677 AGCCCTCGGTCGCCCAGA-TAGC-CATTGA-TGACAGCCAAGATGCCGGCGGCTAGTTCG 9733 Query 7159 TGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATG 7218 || ||||||||| | || ||| || ||| || || || | || | | Sbjct 9734 TGCTTCTCCAGCAAACGACGGAAGTTGAGGATGGTGGTTTCATCGGGGATACGCTCCAAG 9793 Query 7219 CCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCC 7278 | |||||||||||| || || | | ||||||||||||||||||||||| Sbjct 9794 ---CTCAGCCCCGCGAACTGGCGCAGGATGGTGGTCTCGTACAGCGCCTCTTCCATCGCT 9850 Query 7279 ACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGA 7338 || | |||||||| | |||| | ||| | ||||||||||| | ||| Sbjct 9851 GGATCGCTGTAACCGAACCAGTTTTGCATCAGGTGCACGCGCAGCATCGCCATCAGCGGA 9910 Query 7339 AACGGCTTCCGACCCGTCGCCTTGACC----GGCGCATGCGGCGCTATCAACGCCAAAAA 7394 | | | |||| |||||| ||| || ||||||| | ||||| || | || Sbjct 9911 TAGGCCGGACGAC----CGCCTTCACCCTTGGGATAATGCGGCTCGATCAAGGCAATCAA 9966 Query 7395 ACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCTGCTTGCGCGT 7449 || ||| |||||||||||| || |||||||| ||| || | || ||||| || Sbjct 9967 AC-CCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAACTCTTTGCGGGT 10020 Score = 91.5 bits (100), Expect = 8e-15 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 6903 ACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATG 6962 |||||||| ||||||||||| ||| ||||||||| ||||| || |||| ||||| ||| Sbjct 7629 ACGTTGGCCGCCGTGCCCACCACGCTGTGCACCAAGCCCGACTCATCATCGACACCGATG 7688 Query 6963 TGCGCTTTCATGCCGAAATG 6982 ||||| ||||||||||| || Sbjct 7689 TGCGCCTTCATGCCGAAGTG 7708 >seq3960 Length=286 Score = 107 bits (118), Expect = 1e-19 Identities = 122/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 6904 CGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATGT 6963 ||||||| || ||| |||| | |||| ||| || | ||||| |||||||||| Sbjct 193 CGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGT 134 Query 6964 GCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCAC 7023 | || |||||||| || |||||||| || |||||||||||||| |||||||| || || | Sbjct 133 GGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGC 74 Query 7024 GCTTGCCGCT-GCCATTCTTGGTCGAACTGGGCGCGGCAAT 7063 | |||| ||| ||||||||||| ||||| || |||| Sbjct 73 G-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAAT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27323694302800