Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq3109 181 4e-42 >seq3109 Length=292 Score = 181 bits (200), Expect = 4e-42 Identities = 216/292 (74%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 3311 GGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAATC 3370 ||||| |||| ||| |||||||||||||| ||||| || |||||| | | Sbjct 292 GGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTG 233 Query 3371 GCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTC 3427 | ||| |||||||| | || | | || || ||| |||| | ||||| || | Sbjct 232 GTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---ATCC 176 Query 3428 CTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGA 3487 ||||| |||| |||| | ||| |||| || || || |||||||| || ||||||| Sbjct 175 CTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGA 116 Query 3488 TGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCT 3547 ||||||| ||||||||||| ||||| | | |||||| | ||||||||||||||| | | Sbjct 115 TGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTT 56 Query 3548 TCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAAC 3599 ||||||||||||| || ||||| |||||| |||||||||| ||||| || || Sbjct 55 TCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19361506542936