Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq3109 86.0 2e-13 >seq3109 Length=292 Score = 86.0 bits (94), Expect = 2e-13 Identities = 127/179 (71%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 2844 GGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTACATGCTCCT 2903 ||||||| || ||||||||||| ||||||||| | ||||| || |||||| | | Sbjct 292 GGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA---ACACTA 236 Query 2904 CTGGTT---GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTGC 2960 |||||| ||| ||| |||| ||| || || ||| || |||| |||| | | Sbjct 235 CTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCC 176 Query 2961 CTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTTGG 3019 |||| || |||||| ||| ||||||| ||||| ||||| || ||| |||| ||| Sbjct 175 CTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGG 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17732892077220