Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq3109 170 7e-39 >seq3109 Length=292 Score = 170 bits (188), Expect = 7e-39 Identities = 214/291 (74%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 3307 GGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACTACTA 3366 ||||| | || ||| ||||||||| |||| | || || || | |||| |||||| Sbjct 292 GGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTG 233 Query 3367 AGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTA 3426 ||| || |||| | || | |||| || ||| ||| | | ||| || |||| Sbjct 232 GTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTA 173 Query 3427 AGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGC 3486 || |||| |||| |||| ||||||| ||||| |||||||| ||||||||||||| Sbjct 172 AGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGC 113 Query 3487 CTGAGCGTACTGAAGCTAATCCT-TCAAACTTAGATCGTGATGATTCTCGTTATGGATTC 3545 |||| ||||| || ||||| ||| | |||| ||| |||||| |||||||||| ||| Sbjct 112 CTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTC 54 Query 3546 CGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACT 3596 ||||| |||||||| |||| |||||| ||||||| |||||||| || ||| Sbjct 53 CGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19367905983208