Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq3109 168 3e-38 >seq3109 Length=292 Score = 168 bits (186), Expect = 3e-38 Identities = 215/294 (73%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 3310 GGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTCCCTTCCGTTACTACTACTC 3369 ||||| | || ||| ||||||||| ||||| | || ||||| | |||| |||||| Sbjct 292 GGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTG 233 Query 3370 AGTATCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTA 3429 ||| || | || | || | |||| || ||| ||| | | ||| || |||| Sbjct 232 GTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTA 173 Query 3430 AGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGC 3489 || |||| |||| |||| ||||||| ||||| |||||||| ||||||||||||| Sbjct 172 AGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGC 113 Query 3490 CTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCGCTATGGA 3545 |||| ||||| || ||||| ||| ||| ||| | | |||||| |||| ||||| Sbjct 112 CTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCGTTATGGT 57 Query 3546 TTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACT 3599 ||||||||||||||||| |||| |||||| ||||||| |||||||| || ||| Sbjct 56 TTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19383904583888