Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq1635 187 1e-43 seq760 109 3e-20 seq1317 89.7 3e-14 >seq1635 Length=1340 Score = 187 bits (206), Expect = 1e-43 Identities = 602/910 (66%), Gaps = 32/910 (4%) Strand=Plus/Minus Query 6553 GCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCTTTAT 6612 |||| ||||||||| || ||| || ||||| || | |||| ||||| || Sbjct 1152 GCGCGCCATCCACAGGTTCGACAGAGCGAACAGTGTCACCAGTTGCGCCGTGTTTTTGGC 1093 Query 6613 CAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACGGATG 6672 |||||| ||| |||||||| | || || |||||||||||||| || ||||||||||| Sbjct 1092 CAAGCCGCGAAAGCGCACCTTGGTGTAACCGAACTGGCGCTTGATTACCCGGAACGGATG 1033 Query 6673 TTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGACGAGC---GCACC 6729 || || ||| || | | |||||| || || | || || || | || Sbjct 1032 CTCGACCTTGGCGCGCACCTGAGCCTTGGCCTTTTCAATCTTG-CGCTTGGCTTTGTACA 974 Query 6730 CGACACGGTGCTCTTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACATGCCAACG 6789 |||| ||| ||| || | | ||| ||||| ||||| ||||| Sbjct 973 G--CACGCTGCGCTTATCGAGTTTTTTGTAGGTGCTGCGGCGTGCCGCCACCTGCCAGAT 916 Query 6790 CACCTTCAACTCCTGCAC-CTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGA 6848 || |||| |||| || ||| ||||| |||| || ||||| |||||| || Sbjct 915 AAC-TTCACGTCCTTCATGCTCGGGCCGCTTTTCGACACCGGTGTAGCCTGCATCGGCGC 857 Query 6849 ACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTG 6908 | || || || | |||||||| |||| || |||| || || || || ||| Sbjct 856 AGACCACGTTTTCGTCGCCATGCAGCAATTTGTCCACCTGG-GTGACATCCGCCACATTG 798 Query 6909 GCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCT 6968 || ||||||||||||||| |||||||||| ||||| || |||| | || ||||| || Sbjct 797 GCCGCCGTGCCCACTACGCTGTGCACCAGACCCGATTCGTCATCGGCGCCGATGTGGGCC 738 Query 6969 TTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTG 7028 |||||||| |||| ||||||| || ||||||||||||||||| || ||||| |||||| Sbjct 737 TTCATGCCAAAATAATACTGGTTTCCCTTCTTGGTCTGGTGCATTTCCGGGTCGCGCTTG 678 Query 7029 CCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCAC 7088 ||| |||||||||||||||||||| ||||||| || ||||| | |||| | Sbjct 677 CCGTCCTTGTTCTTGGTCGAACTGGGCGCATTGATCAGCGTTGCATCGACGATGGTGCCC 618 Query 7089 -GTCTTTGAG-CAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGC 7146 | | | | |||| | | |||| | || | || | |||| | | || || ||| Sbjct 617 TGGCGCAGCGACAGGCCG-CGGTCGCCCAGA-TAGC-CATTGA-TGACAGC-GAGGATGC 563 Query 7147 --TCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCG 7204 | || | || |||| |||||||||| | || ||| |||||| || ||| | Sbjct 562 CGGCCGCCAGCTCGTGTTTCTCCAGCAAGCGGCGGAAGTTGAGAATGGTGGTTTCGTCGG 503 Query 7205 GCAGTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCG 7264 | | | ||| | | |||||| || || || || | || |||||||||| Sbjct 502 GGA-TGCGCTCCAGGTT--CAGCCCGGCAAACTGGCGCAGGATCGTGGTTTCGTACAGCG 446 Query 7265 CCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCA 7324 | || |||||||| || | |||||||| | |||||| | || | ||||||| Sbjct 445 CTTCCTCCATCGCTGGATCGCTGTAGCCGAACCAGTTCTGCAGCAGATGCACACGCAGCA 386 Query 7325 TCG-TTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGAC----CGGCGCATGCGGCGC 7379 ||| || || || | || ||| | | | |||| || ||| ||| ||| | Sbjct 385 TCGCCATCAACGGGTA--GG---CCGGACGGCCACCTTCACCTTTCGGATAATGTGGCTC 331 Query 7380 TATCAACGCCAAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCT 7439 ||||| | ||| || ||| |||||||||||| || |||||||| ||| || | || Sbjct 330 GATCAAAG-CAATCAAGCCCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAACT 272 Query 7440 GCTTGCGCGT 7449 |||||| || Sbjct 271 CCTTGCGGGT 262 >seq760 Length=2252 Score = 109 bits (120), Expect = 3e-20 Identities = 315/475 (66%), Gaps = 25/475 (5%) Strand=Plus/Plus Query 6985 ACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGG 7044 |||||||||| ||||||||||| ||||| || ||||| ||||| ||| ||||||| Sbjct 4 ACTGGTTACCCTTCTTGGTCTGATGCATTTCCGGGTCGCGCTTACCGTCCTTGTTCTTGG 63 Query 7045 TCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCACGTCTTTGAGCA--GGT 7102 ||||||| ||||| ||||||| ||| ||||| | ||||| ||| | ||| | Sbjct 64 TCGAACTCGGCGCATTGATCAGCGTGGCATCGACGATCGTGC----CTTGGCGCAGCGAC 119 Query 7103 AGCCCT---TCGCACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGC-TCGGCTAACTGG 7158 |||||| |||| | || | || | |||| | | || | || | |||||| | | Sbjct 120 AGCCCTCGGTCGCCCAGA-TAGC-CATTGA-TGACAGCCAAGATGCCGGCGGCTAGTTCG 176 Query 7159 TGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATG 7218 || ||||||||| | || ||| || ||| || || || | || | | Sbjct 177 TGCTTCTCCAGCAAACGACGGAAGTTGAGGATGGTGGTTTCATCGGGGATACGCTCCAAG 236 Query 7219 CCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCC 7278 | |||||||||||| || || | | ||||||||||||||||||||||| Sbjct 237 ---CTCAGCCCCGCGAACTGGCGCAGGATGGTGGTCTCGTACAGCGCCTCTTCCATCGCT 293 Query 7279 ACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGA 7338 || | |||||||| | |||| | ||| | ||||||||||| | ||| Sbjct 294 GGATCGCTGTAACCGAACCAGTTTTGCATCAGGTGCACGCGCAGCATCGCCATCAGCGGA 353 Query 7339 AACGGCTTCCGACCCGTCGCCTTGACC----GGCGCATGCGGCGCTATCAACGCCAAAAA 7394 | | | |||| |||||| ||| || ||||||| | ||||| || | || Sbjct 354 TAGGCCGGACGAC----CGCCTTCACCCTTGGGATAATGCGGCTCGATCAAGGCAATCAA 409 Query 7395 ACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCTGCTTGCGCGT 7449 || ||| |||||||||||| || |||||||| ||| || | || ||||| || Sbjct 410 AC-CCTTCCACGGCACCACCCGATCCATCTCGATCAGGAACAACTCTTTGCGGGT 463 >seq1317 Length=616 Score = 89.7 bits (98), Expect = 3e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 6903 ACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATG 6962 |||||||| ||||||||||| ||| ||||||||| ||||| || |||| ||||| ||| Sbjct 538 ACGTTGGCCGCCGTGCCCACCACGCTGTGCACCAAGCCCGACTCATCATCGACACCGATG 597 Query 6963 TGCGCTTTCATGCCGAA 6979 ||||| ||||||||||| Sbjct 598 TGCGCCTTCATGCCGAA 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27325609961440