Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq575 343 8e-91 seq8664 300 9e-78 seq4923 215 3e-52 seq2299 154 8e-34 seq11919 129 3e-26 seq3981 82.4 4e-12 >seq575 Length=74487 Score = 343 bits (380), Expect = 8e-91 Identities = 646/932 (69%), Gaps = 22/932 (2%) Strand=Plus/Minus Query 6553 GCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAAT-TGCTGTGTGTTCTTTA 6611 ||||| |||||||| |||||||| || |||| ||| || || || || ||||| | Sbjct 66953 GCGCACCATCCACAAATTGCTCAAAGCGAACAAGGTG-GTGATCTGGGCAGTATTCTTCA 66895 Query 6612 TCAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACGGAT 6671 |||| || |||||||| | || | || || || ||||||||||| || ||||| | Sbjct 66894 TCAACCCACGATAGCGGGTCTTCGCATAGCCGAATTGCCGCTTGATGACGCGAAACGGGT 66835 Query 6672 GTTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGACGAGCGCACCCG 6731 | || || |||||| || | ||||||| |||||| | || |||| | ||| || Sbjct 66834 GCTCAACCTTGGCACGGATACCTGCCTTGAGCCGCTCGATCTGATCGTATATCGCGTCCA 66775 Query 6732 ACACGGTG-CTCTTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACATGCCAACGC 6790 | | | | ||| ||||| | ||| |||||||| | | || ||||||||||| Sbjct 66774 A-AGGATCACTCAGGTCCAGTAGTCTGCGCTTGCCCGGTCTCATCGCAACATGCCAACGA 66716 Query 6791 ACCTTCAACTCCTGCACCTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAAC 6850 || | |||| ||| |||| ||||| |||||||| ||||| ||| || | Sbjct 66715 G--TTG--CGTCTGC--CTCACAATGCTTTTCGATTCCCTGATACCCGGCGTCGGCGTAT 66662 Query 6851 ACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGGC 6910 || || |||||||||||||| ||| || | | || || | ||||| || ||||| Sbjct 66661 ACATCTAACTCCTTGCCATGCAGCAACGCCTGG-GCAACGGTGATGTCGTGCACATTGGC 66603 Query 6911 GGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCTTT 6970 ||||| || | || || || ||||| || ||||| || ||||| || ||||||| ||| Sbjct 66602 CGCCGTTCCAATGACTGTATGAACCAGTCCGGAGTCTGCGTCCACGCCGATGTGCGATTT 66543 Query 6971 CATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCC 7030 ||| ||||| ||||| | | ||||||| ||| |||||| ||||| || || |||| Sbjct 66542 CATTCCGAAGTGCCAGTTGCCGCCTTTCTGCGTCGAGTGCATTTCTGGATCCCGGGTGCC 66483 Query 7031 GCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCACGT 7090 | || ||||| ||||||||||||||||||||||| | ||||||||| | | | | Sbjct 66482 GGAACCGTTCTTTGTCGAACTGGGCGCGGCAATCAGGGTGGCGTCGACTGCGGATCCAGC 66423 Query 7091 CTTTGAGCAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGCTCGG 7150 |||| |||| |||| || | | || | | ||||| | || | || | | | Sbjct 66422 CTTT-AGCATCAAGCCTTTTTCCGTCAGGATCTCATTGACCAGCGCGAGCATTTTCGCAG 66364 Query 7151 CTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTC 7210 | | | ||| || |||| || || || || ||||| || || |||| | Sbjct 66363 CCAGCCCATGTGTTTCAAGCAGATGACGGAACCGGAGAATCGTGCTTTCATCGGGCAAAC 66304 Query 7211 GGCTTATGCCTC---CCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCT 7267 | ||||| | | || |||||||| | ||||||| ||| |||||||||||||||| Sbjct 66303 GCACCATGCCGCCGTCGAGACCCGCGAACTCGCGATACAGCGGAACGTCGTACAGCGCCT 66244 Query 7268 CTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCG 7327 ||||||| || ||||| ||| |||||||| ||||||| ||| || || | ||||||| Sbjct 66243 CTTCCATTGCAGGGTCCGACAGACCGAACCACTGCTGCATAAAATGAATTTGAAGCATCG 66184 Query 7328 TTTCGACTGGAAACGGCTTCCGACCCG--TCGCCTTGACCGGCGCATGCGGCGCTATCAA 7385 | ||| || || ||| ||| || | | |||| |||| |||||| | || | Sbjct 66183 TCGCGATCGGGAAAGGCGGCCGTCCGGTTTTGCCT--GCCGGATAGTGCGGCTCGATTAG 66126 Query 7386 CGCCAAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAATACCTGCTTGC 7445 || ||| | | | ||| ||||| ||||| ||||||||| |||||| || |||||| Sbjct 66125 CG-CAATCAGCTTCGACCAAGGCACAACACGCCGCATCTCATCGAGAAATTCCCGCTTGC 66067 Query 7446 GCGTGCG-TCGGTTGCTCAGGTCCAGGCCAAG 7476 ||||||| | |||| ||| ||||||||||| Sbjct 66066 GCGTGCGCTTCGTTG-ACAGATCCAGGCCAAG 66036 >seq8664 Length=1755 Score = 300 bits (332), Expect = 9e-78 Identities = 513/734 (70%), Gaps = 15/734 (2%) Strand=Plus/Plus Query 6550 CCCGCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAAT-TGCTGTGTGTTCT 6608 || |||| |||||| || |||| ||| |||||||| || || || ||| ||||||| Sbjct 1026 CCTGCGCGACATCCAGAGGTTGCCCAGCGCAAACAGTGTC-GTGATCTGCGCAGTGTTCT 1084 Query 6609 TTATCAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACG 6668 | ||||| ||||| || ||| | | | | |||||||| |||||| || ||||||| Sbjct 1085 TCATCAACCCTCGGTACCGCGTCTTGATATAGCCAAACTGCTGCTTGAGCACGCGGAACG 1144 Query 6669 GATGTTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGACGAGCGCAC 6728 |||| || || ||| || | || ||||| | ||||| | || | | | ||| Sbjct 1145 GATGCTCAACCTTGGCGCGCACGCCAGCCTTCAGGCGCTCAATCTGGTTGTATATCGCGT 1204 Query 6729 CCGACACG-GTGCTCTTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACATGCCAA 6787 || | ||| || || ||||| || ||||||||||| || | || |||||||| Sbjct 1205 CC-AGACGATTGTTCAGGTCCAGTTGTCGACGTTTGCCCGGTCGCATCGCAACATGCCAG 1263 Query 6788 CGCACCTTCAACTCCTGCACCTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCG 6847 |||||| | || | || ||||| || ||||||||||| ||||| ||| || Sbjct 1264 CGCACCGGATTCGCCCG-AC-----AACGCTTTTCAATGCCCTGATATCCGGCGTCGGCG 1317 Query 6848 AACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTT 6907 |||| || |||| ||| |||| ||| || || || | | | ||||| ||||| Sbjct 1318 TACACATCCTTTTCCTGGCCGTGCAACAACGC-TTCGGCCGCATTGATGTCGTGAACGTT 1376 Query 6908 GGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGC 6967 ||| || || || | |||||||| |||| ||||| || || |||||||| ||||| || Sbjct 1377 GGCCGCTGTACCAATGACGGTGTGGACCAAACCCGACTCTGCGTCCACACCGATGTGTGC 1436 Query 6968 TTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTT 7027 |||||| ||||||| ||| || || || ||||| |||||||||||||| ||||| || || Sbjct 1437 TTTCATCCCGAAATACCATTGATTTCCCTTCTTCGTCTGGTGCATCTCCGGGTCCCGTTT 1496 Query 7028 GCCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCA 7087 || ||| ||||| ||||||||||| ||| ||||| | ||||||||| | | | Sbjct 1497 TCCAGAGCCGTTCTTCGTCGAACTGGGTGCGCTAATCAAGGTCGCGTCGACCGCTG-ACC 1555 Query 7088 CGTCTTTGAGCAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGCT 7147 | | || |||| |||||||| |||| || | | ||||| | || | ||| Sbjct 1556 CTGCCTTCAGCATCAAGCCCTTCTCACTCAGGATCTCATTGACTACCGCGAGCATCTGCG 1615 Query 7148 CGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCA 7207 |||| | || | || || | ||| || || |||||||| || | |||||||| Sbjct 1616 CGGCCAGGCCGTATGTTTCGAGAAGGTGACGGAACCGCAGAATCGTGCTCTCGTCCGGCA 1675 Query 7208 GTCGGCTTATGCCT---CCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCG 7264 || | || ||| |||||||||| || | || |||| ||||||||| || |||| Sbjct 1676 AACGCGTCATACCTTCGTCCAGCCCCGCAAACTCACGGTACAGCGGCACGTCATAAAGCG 1735 Query 7265 CCTCTTCCATCGCC 7278 |||||||||||||| Sbjct 1736 CCTCTTCCATCGCC 1749 >seq4923 Length=4606 Score = 215 bits (238), Expect = 3e-52 Identities = 188/234 (80%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 5855 GTTATGGGAACGAGCTACGAAGTGGACGTGGTGGCGTGGGCCAGTGAGCAGGCGGCGCTG 5914 || ||||||||||| |||||| |||||||||||| ||||| | ||||| ||||| || Sbjct 1587 GTCATGGGAACGAGATACGAACAGGACGTGGTGGCATGGGCAAACGAGCAAGCGGCACTT 1646 Query 5915 TTGCGGGCCGGCAAGCTTTCAGACATCGACATTCGGCACATCGCGGAGGAGATTGAGGAC 5974 |||| || |||||||| | | ||||||| ||| ||||||||| |||||||| || ||| Sbjct 1647 CTGCGCGCTGGCAAGCTGACTGCCATCGACGTTCAGCACATCGCAGAGGAGATCGAAGAC 1706 Query 5975 GTGGGCAAGAGCGAACAGCGGGAGTTGGCAAGCCGCATGGCGGTACTGCTGGCGCATTTG 6034 |||||||||||||||||||| |||||||||||||| ||| |||| ||| |||| ||| || Sbjct 1707 GTGGGCAAGAGCGAACAGCGCGAGTTGGCAAGCCGTATGTCGGTCCTGTTGGCTCATCTG 1766 Query 6035 CTCAAGTGGCAATATCAGCCGGGCCGCCGGGGTTCGAGCTGGCAGCGCACGATC 6088 || |||||| | | ||||||| || || | |||||||||| ||| ||| Sbjct 1767 CTGAAGTGGAAGTTTCAGCCGTCACGTCGTAGCAAGAGCTGGCAGTTCACAATC 1820 >seq2299 Length=11730 Score = 154 bits (170), Expect = 8e-34 Identities = 372/552 (67%), Gaps = 16/552 (3%) Strand=Plus/Plus Query 6932 CACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACTGGTT 6991 |||||| || || || || | || || ||||||| |||||| ||||| | ||| | | Sbjct 4000 CACCAGTCCAGAATCTGCCTAGACGCCGATGTGCGATTTCATTCCGAAGTACCAGTTGCC 4059 Query 6992 ACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGGTCGAACT 7051 |||||| ||| ||||| |||| || | ||||| || ||||| || ||| | Sbjct 4060 GCCTTTCCGCGTCGAGTGCACTTCTGCATCCAGGGCGCCGCAACCGTTCTTTGTTGAAGT 4119 Query 7052 GGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCACGTCTTTGAGCAGGTAGCCCTTCG 7111 ||||||||||||||| | ||||| || | | | |||| | |||| |||| || Sbjct 4120 GGGCGCGGCAATCAGGGTGGCGTAAACTGCGGATCCAGTCTGT-AGCATCAAGCCTTTTT 4178 Query 7112 CACTGAGTTGCGCGTTGACGGTCTGCAGAAATTGCTCGGCTAACT--GGTGTCGCTCCAG 7169 | | || | | ||| | | || |||||| | | | | ||||| || || Sbjct 4179 CCGTCAGGACCTCATTGGCCAGCGCGAGCAATTGCGCAGTCAGCCCAGGTGTT--TCAAG 4236 Query 7170 CAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCGGCTTATGCCTCCC---AG 7226 ||| || || || || ||||| || ||||||| || ||||| || || Sbjct 4237 CAAATGGCGGAACCGGAGAATCGTGCTTTCATCCGGCAAGCGCACCATGCCGCCGGCGAG 4296 Query 7227 CCCCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGT 7286 ||||||| | |||||||||||||||| |||||| ||||||||||| || ||||| Sbjct 4297 AGCCGCGAACTCGCGATACAACGGCACGTGGTACAGTGCCTCTTCCATTGCAGGGTCCGA 4356 Query 7287 CAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGCTT 7346 ||| |||||||| |||||| ||| || || |||||| ||| ||| || | ||| Sbjct 4357 CAGACCGAACCACTGCTGCGTAAAATGAATTTGCAGCACCGTCGCGATCGGGGAAGGCGG 4416 Query 7347 CCGACC--CGTCGCCTTGACCGGCGCATGCGGCGCTATCAACGCCAAAAAACGCCTGCCA 7404 ||| || | |||| |||| |||||| | |||| || ||| | | | ||| Sbjct 4417 CCGTCCATTTTTGCCT--GCCGGATAGTGCGGCTCGATCAGCG-CAATGAGCTTCGACCA 4473 Query 7405 CGGCACCACACGTTCCATCTCATCCAGAAATACCTGCTTGCGCGTGCGTCGGTTGCTCAG 7464 |||| |||| ||||||||| || ||| || ||||||||| || | ||||| ||| Sbjct 4474 ACGCACAACACACCGCATCTCATCGAG-AATTCCCGCTTGCGCGCGC-TTGGTTG-ACAG 4530 Query 7465 GTCCAGGCCAAG 7476 ||||||||||| Sbjct 4531 ATCCAGGCCAAG 4542 >seq11919 Length=1104 Score = 129 bits (142), Expect = 3e-26 Identities = 200/282 (71%), Gaps = 9/282 (3%) Strand=Plus/Minus Query 6809 TCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTTGCCA 6868 || || |||||||| | || ||||| || ||| ||||| | || | || | ||| Sbjct 785 TCATCACGCTTGTCTACACCAATGTAGCCTGCGTCGGCGAACGCTTCCTCTTCATGGCCG 726 Query 6869 TGCACCAATGCGT-TGCGCTGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTACGG 6927 |||| || || || ||| ||| ||| || |||||||| |||||||| || || Sbjct 725 TGCAGCA--GCAAATGGGCTTGCGACACATCCGACACGTTGGCCGCCGTGCCAACCACAC 668 Query 6928 TGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACT 6987 |||| |||| ||||| || || ||||| |||| ||| |||||||| || || ||||| | Sbjct 667 TGTGGACCAAGCCCGAATCGGCGTCCACGCCAACGTGGGCTTTCATCCCAAAGTGCCATT 608 Query 6988 GGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACG---CTTGCCGCTGCCATTCTTGG 7044 ||| || ||||| || || |||||||| |||||||| ||| ||| | ||||||| Sbjct 607 CGTTTCCCTTCTTCGTTTGATGCATCTCCGGGTCACGGCTCTTCCCGGCG---TTCTTGG 551 Query 7045 TCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGC 7086 |||| ||||| | || | || || || |||| ||||| Sbjct 550 TCGACGGTGGCGCTTCGATGATCGTCGCATCAACCAGCGTGC 509 >seq3981 Length=6180 Score = 82.4 bits (90), Expect = 4e-12 Identities = 115/159 (72%), Gaps = 8/159 (5%) Strand=Plus/Minus Query 6903 ACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATG 6962 ||||| || |||||| | || || |||| |||| |||| | ||||||| | ||| Sbjct 5796 ACGTTTGCCGCCGTGACTACCGCGCTGTGTGCCAGACCCGTTTGGCTATCCACATCGATG 5737 Query 6963 TGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCA 7022 ||| ||||||||||| | |||||| | || ||| | ||||| ||||| || ||||| Sbjct 5736 TGCAGCTTCATGCCGAAGTACCACTGCTGGCCCTTCCTCGTCTGATGCATTTCGGGGTCT 5677 Query 7023 CG---CTTG-CCGCTGCCATTCTTGGTCGAACTGGGCGC 7057 || |||| ||| | ||||| || ||||||||||| Sbjct 5676 CGCGCCTTGTCCG----CGTTCTTCGTGGAACTGGGCGC 5642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27306575428720