Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_002014.1 Length=6883 Score E Sequences producing significant alignments: (Bits) Value seq986 87.8 8e-14 seq3005 86.0 3e-13 >seq986 Length=262 Score = 87.8 bits (96), Expect = 8e-14 Identities = 89/113 (79%), Gaps = 5/113 (4%) Strand=Plus/Plus Query 6335 CGTCAAACGCTAAATCGTGGGGGCCCCTTTGGG--CCGATTTAGTGATTTACGACAC-TC 6391 |||||| | |||||||| ||| ||| || ||| ||||||||||| |||||| ||| || Sbjct 148 CGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTC 207 Query 6392 CATA--AATATCCTTGTTATGGGTGATGGTTCACGTAGTGGGCCATCGCCTTG 6442 | || | |||| | |||||||||||||||||||||||||||||| || Sbjct 208 GACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTG 260 >seq3005 Length=579 Score = 86.0 bits (94), Expect = 3e-13 Identities = 75/92 (82%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 6368 CCGATTTAGTGATTTACGACACT----CCATAAATATCCTTGTTATGGGTGATGGTTCAC 6423 ||||||||||| |||||| ||| || | ||| | ||| | ||||||||||||||| Sbjct 574 CCGATTTAGTGCTTTACGGCACCTCGACCCCAGATAAC-TTGATTTGGGTGATGGTTCAC 516 Query 6424 GTAGTGGGCCATCGCCTTGTTAGACGTTTTTT 6455 |||||||||||||||| || |||||| ||||| Sbjct 515 GTAGTGGGCCATCGCCCTGATAGACGGTTTTT 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21903129718460