Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq986 441 3e-120 seq4799 389 2e-104 seq3005 378 3e-101 seq2296 244 4e-61 >seq986 Length=262 Score = 441 bits (488), Expect = 3e-120 Identities = 249/252 (99%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 70 Query 5548 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5607 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 71 CAACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTAGCCA 130 Query 5608 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 5667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 190 Query 5668 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5727 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 191 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 250 Query 5728 CATCGCCCTGAT 5739 |||||||||||| Sbjct 251 CATCGCCCTGAT 262 >seq4799 Length=729 Score = 389 bits (430), Expect = 2e-104 Identities = 240/262 (92%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 5869 CCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAATNNNNNNNNNNNNN 5928 |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 262 CCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAATGCGAATTTTAACAAAATAT 203 Query 5929 NNNNGTTTACAATTTAAATATTTGCTTATACAATCTTCCTGTTTTTGGGGCTTTTCTGAT 5988 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 202 TAACGTTTACAATTTAAATATTTGCTTATACAATCTTCCTGTTTTTGGGGCTTTTCTGAT 143 Query 5989 TATCAACCGGGGTACATATGATTGACATGCTAGTTTTACGATTACCGTTCATCGATTCTC 6048 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 142 TATCAACCGGGGTACATATGAGTGACATGCTAGTTTTACGATTACCGTTCATCGATTCTC 83 Query 6049 TTGTTTGCTCCAGACTCTCAGGCAATGACCTGATAGCCTTTGTAGACCTCTCAAAAATAG 6108 ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 82 TTGTTTGCTCCAGACTCACAGGCAATGACCTGATAGCCTTTGTAGATCTCTCAAAAATAG 23 Query 6109 CTACCCTCTCCGGCATGAATTT 6130 |||||||||||||||| ||||| Sbjct 22 CTACCCTCTCCGGCATTAATTT 1 >seq3005 Length=579 Score = 378 bits (418), Expect = 3e-101 Identities = 212/214 (99%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 5655 GGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTTGGGTGATGGT 5714 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 579 GGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAGATAACTTGATTTGGGTGATGGT 520 Query 5715 TCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACG 5774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 TCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACG 460 Query 5775 TTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTAT 5834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 459 TTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTAT 400 Query 5835 TCTTTTGATTTATAAGGGATTTTGCCGATTTCGG 5868 |||||||||||||||||||||||||||||||||| Sbjct 399 TCTTTTGATTTATAAGGGATTTTGCCGATTTCGG 366 >seq2296 Length=516 Score = 244 bits (270), Expect = 4e-61 Identities = 135/135 (100%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 5734 CCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCT 5793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCT 60 Query 5794 TGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGGA 5853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGGA 120 Query 5854 TTTTGCCGATTTCGG 5868 ||||||||||||||| Sbjct 121 TTTTGCCGATTTCGG 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20380435144780