Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq986 423 8e-115 seq4799 410 5e-111 seq3005 320 7e-84 seq2296 196 2e-46 >seq986 Length=262 Score = 423 bits (468), Expect = 8e-115 Identities = 245/252 (97%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 70 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 71 CAACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTAGCCA 130 Query 5609 CGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTA 5668 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 131 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 190 Query 5669 GTGCTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5728 ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 191 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 250 Query 5729 CATCGCCCTGAT 5740 |||||||||||| Sbjct 251 CATCGCCCTGAT 262 >seq4799 Length=729 Score = 410 bits (454), Expect = 5e-111 Identities = 247/260 (95%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 5872 TACTGGTTAAAAAATAAGCTGATTTAACAAATATTTAACGCGAAATTTAACAAAACATTA 5931 || |||||||||||| ||||||||||||||| |||||| ||||| |||||||||| |||| Sbjct 260 TATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAATGCGAATTTTAACAAAATATTA 201 Query 5932 ACGTTTACAATTTAAATATTTGCTTATACAATCATCCTGTTTTTGGGGCTTTTCTGATTA 5991 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 200 ACGTTTACAATTTAAATATTTGCTTATACAATCTTCCTGTTTTTGGGGCTTTTCTGATTA 141 Query 5992 TCAACCGGGGTACATATGATTGACATGCTAGTTTTACGATTACCGTTCATCGATTCTCTT 6051 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 140 TCAACCGGGGTACATATGAGTGACATGCTAGTTTTACGATTACCGTTCATCGATTCTCTT 81 Query 6052 GTTTGCTCCAGACTTTCAGGTAATGACCTGATAGCCTTTGTAGACCTCTCAAAAATAGCT 6111 |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 80 GTTTGCTCCAGACTCACAGGCAATGACCTGATAGCCTTTGTAGATCTCTCAAAAATAGCT 21 Query 6112 ACCCTCTCCGGCATGAATTT 6131 |||||||||||||| ||||| Sbjct 20 ACCCTCTCCGGCATTAATTT 1 >seq3005 Length=579 Score = 320 bits (354), Expect = 7e-84 Identities = 198/212 (93%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 5656 GGGTTCCGATTTAGTGCTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGT 5715 |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 579 GGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAGATAACTTGATTTGGGTGATGGT 520 Query 5716 TCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACG 5775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 TCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACG 460 Query 5776 TTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTAT 5835 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| Sbjct 459 TTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTAT 400 Query 5836 TCTTTTGATTTATAAGGATTTTTGTCATTTTC 5867 ||||||||||||||||| ||||| | |||| Sbjct 399 TCTTTTGATTTATAAGGGATTTTGCCGATTTC 368 >seq2296 Length=516 Score = 196 bits (216), Expect = 2e-46 Identities = 123/133 (92%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 5735 CCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCT 5794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCT 60 Query 5795 TGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTTATAAGGAT 5854 |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| Sbjct 61 TGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGGA 120 Query 5855 TTTTGTCATTTTC 5867 ||||| | |||| Sbjct 121 TTTTGCCGATTTC 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20383634082960