Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq289 1835 0.0 >seq289 Length=5418 Score = 1835 bits (2034), Expect = 0.0 Identities = 2580/3591 (72%), Gaps = 137/3591 (4%) Strand=Plus/Plus Query 468 TAATCGAAGAGTTAGACGAATGCTACAACGTGCTCGGACAACTTGATATTAATAACACTA 527 |||| || || || | |||||||||| |||||| |||||||||||||||||||||| Sbjct 1226 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 1285 Query 528 TAGACCACAAACCTATCGGTAACGCCAAATGGGACTTAATGTATGAAAAACCTGTCTATA 587 |||||||| || || ||| |||||| ||| | | || || | || Sbjct 1286 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTT---- 1341 Query 588 AACACTGGTATG-----AACTGGTATCAAAACGACCCCTTAAATCAATCAGAGAGGACTA 642 || | | | || | |||| | |||| || ||||| || | || || || Sbjct 1342 -ACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTA 1400 Query 643 CAACTATGCAAAGGCTAAGGGTACTAAAGATGAGTGCTCGAAAATCCTTGAGGAATCCAC 702 || || | || || |||| ||| |||||||| || | | | || |||| ||||| Sbjct 1401 TAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCAC 1460 Query 703 CATGAAATCCCGCCGTGGCTTTACCGTTCAGAGATTGATGAATGCTATGCGTACTGCCCA 762 |||||||| || | |||||| | ||||| | ||||||||||| ||||| || || Sbjct 1461 TATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCA 1520 Query 763 CACTGATGGCTGGTATGTTGTATTCGATACTCTCACCTTAGCTGATGATCGTATTA-AGG 821 ||||||| |||| | | || || || |||||||| || ||||| || || |||| ||| Sbjct 1521 TGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCG-ATTAGAGG 1579 Query 822 ACTTCTATGCTAACCCCAATGCTCTTCGTGACTATTTCCGTGATATTGGCCGTATGGTTC 881 || |||| ||| ||||||||| | ||||||||||| ||||||||||| |||||||||| Sbjct 1580 CGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTC 1639 Query 882 TCACTGCCGAGGGTCGTTCGGTCCATGATTCATCTTCGGACTGCTATCAGTACTTTTGTG 941 | ||||||||||||| || |||||||| | |||||||||||||| ||||||| Sbjct 1640 TTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTG 1699 Query 942 TGCCTGAGTATGGCACCCAGC--ATGGCCGTTTACACTTTCACGCAGTGCATCTTATGCG 999 ||||||||||||| | |||| |||||||| | || || || || ||||| ||||||| Sbjct 1700 TGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCG 1757 Query 1000 CACACTTCCTTTGGGTTCTCTCGACCCTAACTTTGGTAAGCTGGTGCGTACTAATCGGCA 1059 ||||||||| ||| | |||||||| |||||| | ||| || | | || || Sbjct 1758 GACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCA 1817 Query 1060 AATAAATAGCTTGCAAAACACATGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTA 1119 |||||||||||||||| || ||||||||||||||| ||||||||||||||| || || Sbjct 1818 GTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTA 1877 Query 1120 TTCTCAGGATGCTTTCTCTCGCGCTGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACC 1179 | ||||| ||||| || || |||| ||| | |||||||| ||| | || ||||| || Sbjct 1878 CACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCC 1937 Query 1180 CCTTAAATCCACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAATAAAAA 1239 |||||| | ||| ||||||||||| || ||||| || |||||||||||||| ||||| Sbjct 1938 GCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAA 1997 Query 1240 ATCTGATGTTGACATAGCCGCAAAAGGCTTAGGGAATCAAAAATGGAACGCTACATTAAA 1299 || ||| | ||| | || || ||||| |||| | || |||||||| || |||| Sbjct 1998 GTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAA 2057 Query 1300 AACGCAGATGGCTCTTTTACCAAAGAAACTATTTCGAATTCGAATGAGCCGCAACTTCGG 1359 ||| || || | || | || ||||| || || |||| ||||||||||||||||||| Sbjct 2058 AACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGG 2117 Query 1360 GATGAAACTACTCCCAATGACGACGCTGACCGCGGAGTGTTTAATCCAACTGACCCAAGT 1419 ||||||| | ||| ||||||| | ||| || ||||||| ||||||||||| ||| | | Sbjct 2118 GATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCT 2177 Query 1420 GGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACG 1479 ||||||||||| ||| ||||||||| | || |||||||||||||| || | |||| | | Sbjct 2178 GGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAG 2237 Query 1480 ATTGAGGCTGGCAAAGCAATCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAA 1539 ||||||||||| ||| |||||||||||||||||| |||||||||||||||||| || Sbjct 2238 ATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAA 2297 Query 1540 TCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTT 1599 |||||| ||||| |||||| || || || || || | |||| ||| |||||||| Sbjct 2298 TCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTT 2357 Query 1600 TATCGCTTCAATGACGCAGAAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACTA 1659 ||||||||| ||||||||||| ||| || | |||||||||||||||| | ||||| || Sbjct 2358 TATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTA 2417 Query 1660 CGTTACTAATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGG 1719 || ||| ||||||||| || |||| |||||| |||||||||||||||||||||| Sbjct 2418 TCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGG 2477 Query 1720 TGGAAAATGAAGAACTTCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACC 1779 ||||||||| || ||| | || ||| | |||||| |||||||| || ||| Sbjct 2478 CGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACC 2537 Query 1780 TTTCGCCATCATCTCAACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCT 1838 ||||||||||| || |||| | | |||| ||||||||| | ||||| || || ||||| Sbjct 2538 TTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCT 2596 Query 1839 CAATATGATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCGTACATGG 1898 |||||| | ||| | | | ||||||||||| | ||||| |||||| || ||||| Sbjct 2597 TAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGG 2656 Query 1899 CAAAGAATCAATGCTTGACATTCTAAATGAACGTGGCCTATTATCCACCTTGCCAAATG- 1957 | ||| || | |||||||| |||| || ||||| || ||| | | | ||| Sbjct 2657 TAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTAT---CTGAGTCCGATGC 2713 Query 1958 -GCTTAAC--TTACAAAGGAATCAAAAATGA---AAGCAAATGAGAACGCAGTAGCCTTT 2011 | | ||| || | | || || |||| ||| | ||| | | ||| || Sbjct 2714 TGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTC 2773 Query 2012 CAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACTGAG 2071 || |||||| | ||||| || || || |||||||| ||| | ||| | || | || || Sbjct 2774 CAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAA 2833 Query 2072 GACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGTGCT 2131 || |||||||| || | || || || || |||||||| ||||||||||| |||||| Sbjct 2834 GATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCT 2893 Query 2132 CGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGCTTT 2191 || ||| ||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 2894 CGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTT 2953 Query 2192 CCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATT 2251 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2954 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATT 3013 Query 2252 CAAACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGTGTC 2311 |||||||| ||||| || ||||||||||||||||| || |||||||| |||||||| ||| Sbjct 3014 CAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTC 3073 Query 2312 GATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGAAAC 2371 || |||||||||||||||||| | |||||||||||||||||||||||||| |||||| Sbjct 3074 GAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAAC 3133 Query 2372 ACTGAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGAGTG 2431 ||||| || ||||| |||||||| | || | |||| ||||| | || || |||||||| Sbjct 3134 ACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTG 3193 Query 2432 ATG-GATGTC------TAAAAAATCTATTCGC---CGCTCTGGT---------------- 2465 ||| ||||| ||||||| | | || ||| ||||| Sbjct 3194 ATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGC 3253 Query 2466 -----------GGCAAATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCT 2514 ||||| |||||| ||||| || |||||||| || || |||||| | Sbjct 3254 GAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTT 3313 Query 2515 AATCTCTAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAACTT 2574 ||| | |||||||||||||||| || || |||||| | |||||||| | |||||| Sbjct 3314 AATTGC--AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTG 3370 Query 2575 CCGCTGAACGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGAC 2634 ||| || ||||| ||||||||||| || ||||| | ||| |||||| | || || | Sbjct 3371 GCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTC 3430 Query 2635 GCCTTAAAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAATGG 2694 | |||| || || || ||||| ||| ||||||| || || | ||| | || | Sbjct 3431 GTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCG 3490 Query 2695 TAGGCGCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACG 2754 | |||||| | ||||||||||| | |||||||| || ||| | |||||| || ||| Sbjct 3491 TTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACA 3550 Query 2755 TCTTTACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTATGA 2814 | |||||||| ||| ||||||||||||| || |||||| |||| |||||| | || |||| Sbjct 3551 TTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA 3610 Query 2815 AGACTGGCGTTAACGCTACTCCTCTGGC-TCCGGTAACTTGTTCCTCTGGCT---GGGAT 2870 || ||| ||||| || |||||||| | | | |||| | |||| | || Sbjct 3611 AGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC----ACTACTGGTTATATTGAC 3666 Query 2871 TCTGCTGCCTATCTTGGCAC---TATCCCGTCAACTAATTTGAAGGTTCCTAA--ATTCC 2925 ||| || | ||||||||| || ||| || ||| || | ||||| ||| Sbjct 3667 CATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAAT---AAAATCCCTAAGCATTTG 3723 Query 2926 TTCATCAATCTTATCTCAATATTTACAACAACTACTTTAAGCCGCCGTGGTCTAATGACC 2985 || ||| |||| | ||||| || |||||||| ||||| |||||||| ||||| Sbjct 3724 TT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACC 3781 Query 2986 TCACCTATGCTAACCCATCTAATATGCCCGCTGAGGAT--TACAAATGGGGCGTTC--GT 3041 ||| | ||||||| ||||| || | | ||| | | | | ||| | Sbjct 3782 GTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTT 3838 Query 3042 GTCGCTAACTTAAAATCTATCTGGACCGCGCCCCTTCCTCCTGATTCATTAAC-TAAGCA 3100 | || | || |||| | || ||||| || || ||||||||||| | | | | | | Sbjct 3839 GCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGAC-TGAGCTTTCTCG 3896 Query 3101 GGATATGACTACTGGCGCTACCA---CTATCGATATTATGGGCCTACAAGCTGCCTATGC 3157 | ||||| ||| |||||| |||| || |||||||| || |||||||| ||||| Sbjct 3897 CCAAATGACGACT---TCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGC 3953 Query 3158 TAAACTCCACACTGAACAGGAACGTGACTATTTCATGACTCGCTACCGCGATATTATGAA 3217 ||| | || ||||| || |||||||| || |||||| || |||| ||| |||| Sbjct 3954 TAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTC 4013 Query 3218 AGACTTTGGCGGTCACACCTCCTACGACGGTGATAACCGTCCTCTGCTCCTGATGCGCTC 3277 ||||| ||| | ||||| || |||| ||| ||||||||| | || | |||||||| Sbjct 4014 TTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTC 4073 Query 3278 TGAATTTTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAAACTTCATTGGGTCAGTT 3337 | | | ||||| ||||||||||| || || || ||||||||||| || || || ||||| Sbjct 4074 TAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTT 4133 Query 3338 CTCTGGTCGCGTCCAACAAACCTTTAATCATAAAGTGCCTCGCTTCTATGTTCCTGAGCA 3397 |||||||| || ||||| |||| ||| ||| ||||| || |||| |||||||||||| Sbjct 4134 TTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCA 4193 Query 3398 TGGCGTAATTATGACTTTATCTGTTACTCGCTTCCCTCCTACT--CACGAAATGGAAATG 3455 |||| || | ||| | | || ||| || || |||||| || ||| || || Sbjct 4194 TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATT 4251 Query 3456 CACTATCTCGTCGGTAAGGAATCTCTGACTTATACTGACATTGCCTGTGACCCTGCTCT- 3514 || || || || ||| | || |||||||||| || ||||| | ||||||| | | Sbjct 4252 CAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG 4311 Query 3515 TATGGCTAACCTGCCTCCGCGTGAAATTGAGGTAAAAGACCTCTTTCACTCTGCTGGT-- 3572 |||||| ||| |||| |||||||||||| | || || | || | |||| || | Sbjct 4312 TATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTC 4370 Query 3573 -ACTGGTAAATTCAAAATTGCCGAAGGTCAATGGTATCGTACTCAGCCTGACCGCGTTGC 3631 || || || || ||||| || ||||| ||||||||| | |||| ||| | Sbjct 4371 GTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC 4430 Query 3632 CTTCC--CTTATAACGCTCTTGACGGCTTCCCTTTCTATTC-TGAACTGCCGTCTAATGA 3688 ||| ||||| || |||||| |||||||| ||| |||| |||| ||| ||| ||| Sbjct 4431 --TCCTGCTTATCACCTTCTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGA 4487 Query 3689 TATTCTCGAACGTGTACTTGTTCGAACTGATAACTATGATGAAATCTTCCAGTCTATGCA 3748 | | | ||||| |||||| |||| || | ||||| | |||||||| | || Sbjct 4488 TTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCA 4547 Query 3749 ACTTGCACACTGGAACATGCAAACTAAATTTAACACTACTGTATATCGTCATATGCCTAC 3808 | || ||||| | || ||||||||| || || ||||| || |||| || Sbjct 4548 GTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGAC 4607 Query 3809 CACTCGTGATGGCATCATGA---CGTCATAAAA---------------CAAAACGTTGAA 3850 |||||| ||| ||||||| ||| |||||| | |||| ||| Sbjct 4608 CACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAA 4667 Query 3851 CGGGTACAAATTTTAATTTGTGCCTGTTCAAGGTTGAACAAGCGAAGCGCGTTAGCTAAC 3910 |||| |||||||||||| |||| | |||||| ||||||||||||| ||| | Sbjct 4668 GCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTT 4727 Query 3911 TTACTTAAGGAAATT-CTCATGTTTCAAACTTATCTCTCTAAACATAATTC 3960 | ||| |||| || |||||||||| |||| | | ||| |||||||| Sbjct 4728 CTGCTT-AGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTC 4777 Score = 170 bits (188), Expect = 7e-39 Identities = 434/687 (63%), Gaps = 42/687 (6%) Strand=Plus/Plus Query 4784 TGCTGCTGCTAAAGGTAAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAA 4843 ||| |||| |||||| |||||||| |||||||||||| |||| || || || || || Sbjct 222 TGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA 281 Query 4844 CCCGTGGGAACGTGCTGGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCA 4903 | ||||| |||||||| |||| |||||| |||||||| |||||||| || ||||| | Sbjct 282 TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGA 341 Query 4904 AAACCAAAAGGAATTAACTCGCATGCAGCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNN 4963 || ||||| || | ||| ||||| || ||| Sbjct 342 GAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCA 401 Query 4964 NNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAGTCTGTTACTTCTCGGCAAAATACTAA 5023 || ||||| | ||||| || || ||||| || Sbjct 402 AAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAA 461 Query 5024 GGACTCTGTGTATGCTCAAAACGAAATGCTCCAATACAACCAAAAAGAATCTATGTCACG 5083 ||| || ||||| ||||| || ||||| || | || || || |||| | || Sbjct 462 AGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCG 521 Query 5084 CGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAACAACAAACTTCTGAAATTAT 5143 ||||| ||||| | |||||||| | || |||| ||||| || ||| || ||||| Sbjct 522 CGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTAT 581 Query 5144 GCGGCAAATGCTTACTCAGGCTCAAACCTCAGGTCAACACTTTACAAATGACCAAATCCA 5203 ||| |||||||||||||| |||||||| | ||||| | ||||| |||||||||||| | Sbjct 582 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAA 641 Query 5204 AGAACTTACTCGAAAGGTCGGCGCTGATATTGATGCTGTTCGTGCTAACACTGAACGTAC 5263 |||| | ||||| ||||| | ||||| |||| |||| | || | Sbjct 642 AGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTC-----ATCA--------GC 688 Query 5264 ACATGTAGAAACGGACCGCTCTAAGCAGGAGGTCCAAAACTCTCGTTACGCTTCCTCACA 5323 | | | |||| | | || || | || || || Sbjct 689 AAACGCAGAATCAG-----------------------------CGGTATGGCTCTTCTCA 719 Query 5324 AGTCGGTAAAACCGCCAAGGATGTATCAAATGTCATTAGTGACGCATCTTCTGGTATTGT 5383 | || || || |||||| | || |||||| | | ||| || |||||||| | || Sbjct 720 TATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGT 779 Query 5384 TGATTATTTTCGTGGCGTTGATAAAGCTGTCGCGGATACTTGGAACAATTATTTCAAAGA 5443 |||| ||||| ||| ||||||||||||| || |||||||||||||||| | ||||| Sbjct 780 TGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGA 839 Query 5444 TGGCAAATCGGATGGGATAAGCTCAAA 5470 || ||| | ||||| || |||| || Sbjct 840 CGGTAAAGCTGATGGTATTGGCTCTAA 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442813469590