Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_001331.1 Length=7349 Score E Sequences producing significant alignments: (Bits) Value seq24876 98.7 5e-17 >seq24876 Length=238 Score = 98.7 bits (108), Expect = 5e-17 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 4621 TGGTCGAGTTCGCCGGCTACGAATGGTCCAAGGGCCGTATCGGTCGCGACTCTGGCTATC 4680 |||||||||||||||| | ||| | ||| ||| | || || ||||| ||||| | Sbjct 213 TGGTCGAGTTCGCCGGGGAAATCTGGCACTCGGGGCGTGTGGGCCGGGACTCGGGCTACC 154 Query 4681 AGTACCGCCTGCAGAACGCCGAAATGGGCCTGATCCTGCTGATCAAGAACCACAACATCA 4740 ||| | ||||| |||||||| | || | | ||||||||||||||| |||| || Sbjct 153 AGTGCAAGCTGCAAAACGCCGACCTCGGGTTCGTGCTGCTGATCAAGAACTTCAACGCCA 94 Query 4741 AGGTCGACACCATTGGCTCGCACCTCAAGATCGAGGTGTCGCCCCACGCCATTGACG 4797 || | || || ||| | ||||| || ||||| |||||||| |||||| ||| || Sbjct 93 AGCTGGAGCAGATCGGCCCACACCTGAAAATCGAAGTGTCGCCGCACGCCCTTGCCG 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23392000458916