Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq19647 78.8 5e-11 >seq19647 Length=277 Score = 78.8 bits (86), Expect = 5e-11 Identities = 101/138 (73%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 6815 CGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTTGCCATGCACC 6874 ||||| |||| || ||| ||||||||| || | | || |||| |||||||| | Sbjct 139 CGCTTCTCGACACCGGTATAACCGGCATCGGCGCAGATCACGTTTTCCTCGCCATGCAGC 80 Query 6875 AATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTACGGTGTGCAC 6934 || || | |||| || ||||| |||||||||||| ||||| |||||| ||||||| Sbjct 79 AACTTGTCGACCTGG-GTAACGTCCGCGACGTTGGCGGCAGTGCCGACTACGCTGTGCAC 21 Query 6935 CAGCCCCGAGTCCGCATC 6952 || ||||| || |||| Sbjct 20 CAAACCCGACTCGTCATC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27316789815280