Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900007765.1_202016-02-08]
125 sequences; 9,357,276 total letters
Query= NC_001730.1
Length=6089
Score E
Sequences producing significant alignments: (Bits) Value
seq54 951 0.0
>seq54
Length=5386
Score = 951 bits (1054), Expect = 0.0
Identities = 1325/1847 (72%), Gaps = 70/1847 (4%)
Strand=Plus/Minus
Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618
|||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | ||
Sbjct 4753 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 4694
Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678
|||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||
Sbjct 4693 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 4634
Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 4633 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 4574
Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798
|||||||||||||||||||||||||||||||| || || || ||| | |||||||||||
Sbjct 4573 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 4514
Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858
|| |||| |||||||||||||||||||||||||| |||||||| |||||||| | |||
Sbjct 4513 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 4454
Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918
|||| ||| ||||| | |||||| || || | | | ||| || ||||| ||
Sbjct 4453 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 4394
Query 2919 GCTCGTCAGAAATTACGCGCAAATGGGTTGA---AATG---ATATGAAAAAAGCACGT-- 2970
| ||||| |||||||| ||| | || ||| |||| | | | ||||| ||||
Sbjct 4393 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 4336
Query 2971 ---CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGC 2996
|| || || | |||||| ||||||| ||
Sbjct 4335 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 4276
Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTA 3052
||| || ||||||||||| ||| || |||||||| ||| |||||| ||| |||
Sbjct 4275 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 4216
Query 3053 AGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCA 3112
||||| | | ||||||||| | |||||| || || ||| |||||| || ||
Sbjct 4215 AGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA 4156
Query 3113 TCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGT 3169
||||| ||| ||| ||| | || ||||||||| | | || ||||| ||||| ||
Sbjct 4155 TCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 4099
Query 3170 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCG 3229
|||||||||||| ||||| ||| | || || ||||| ||| | ||||||||||| ||||
Sbjct 4098 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 4039
Query 3230 TCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCA 3289
|||||| | || ||||| |||| || ||| |||| ||||| ||| | || ||||||||
Sbjct 4038 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 3979
Query 3290 TGTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCC 3349
||||||||||| ||||||||| | || ||| ||||||||| |||| | || || ||
Sbjct 3978 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC 3919
Query 3350 TTCCGTTACTACTACTAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAA 3409
| |||| |||||| ||| || |||| | || | |||| || ||| ||| |
Sbjct 3918 GACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGA 3859
Query 3410 GAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTT 3469
| ||| || |||||| |||| |||| |||| ||||||| ||||| ||||||||
Sbjct 3858 TACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTT 3799
Query 3470 CCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAA-CTTAGATCGTGATG 3528
||||||||||||||||| ||||| || ||||| ||| | |||| ||| ||||
Sbjct 3798 TAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATG 3740
Query 3529 ATTCTCGTTATGGATTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTC 3588
|| |||||||||| |||||||| |||||||| |||| |||||| ||||||| |||||||
Sbjct 3739 ATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTC 3680
Query 3589 CGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTT 3648
| || ||| |||| || |||||| | | | || || ||||| |||||||||
Sbjct 3679 CTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTC 3620
Query 3649 TGCAGGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTT 3708
|||| || |||||||| | | || ||||| || || ||| ||| || ||||||||||
Sbjct 3619 TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTT 3560
Query 3709 ACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGT 3768
||| ||||||||| || ||||| ||| |||||| ||||| || || ||||| || |
Sbjct 3559 ACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTT 3500
Query 3769 TGCTTGTTATGCATACCGATTTTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAAT 3828
| ||||| |||| | || | ||||| || || || || ||||| || || ||||||
Sbjct 3499 TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAA 3440
Query 3829 CTTCCCTTGGACAGTTTTCGGGGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGAT 3888
| || | || |||||||| || || ||||||||||| | |||||| || |||||||| |
Sbjct 3439 CGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTT 3380
Query 3889 TCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCA 3948
|||| || ||||||||||| ||| | ||| | ||| ||||| || |||||||
Sbjct 3379 TCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTG 3320
Query 3949 GTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCTG 4008
|| ||| ||| || ||| | | | ||||||||||||||| ||||||
Sbjct 3319 CGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTG 3260
Query 4009 GTGACCCGGCTTTGATTGGTAATTTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCC 4068
| ||||| | |||| ||| || |||||||||||||| |||||| |||| ||||||
Sbjct 3259 GCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCC 3200
Query 4069 GTGATGGTCGCCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATC 4128
|| |||| || | ||| ||||| |||| ||| | ||||||||| | |
Sbjct 3199 GTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGC 3140
Query 4129 CGGATTATGTTAACTAC-AAGTATCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCG 4187
| |||||| || | ||||| | ||||| || ||||| ||| || | || ||
Sbjct 3139 CTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCG 3081
Query 4188 CCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTAT 4247
| || ||||||| | |||| || | || ||| ||| |||| |||
Sbjct 3080 C---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTAT 3033
Query 4248 AATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTT 4307
| ||||||||||| |||||| | |||||||||| ||||| | | ||||||
Sbjct 3032 GACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTG 2973
Query 4308 AATGTTTATCGCCATATTCCTACTGTTCGTGATTCTATTATGACCTC 4354
| ||||||||| || | || || ||| ||||| || ||||| ||
Sbjct 2972 ACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 2926
Score = 158 bits (174), Expect = 5e-35
Identities = 280/400 (70%), Gaps = 10/400 (3%)
Strand=Plus/Minus
Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351
|| ||||| | || |||||||| | || | || || ||||| || |||| || ||
Sbjct 643 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 584
Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411
|| || ||||||||| | ||||| |||||| | | ||||||| ||||| ||
Sbjct 583 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 524
Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471
|| ||||| || ||| ||||| || ||||||||||| ||| |||||||||| |||
Sbjct 523 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 464
Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529
| || | |||| | || |||||||||| || | ||||| | ||||||| ||||
Sbjct 463 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 406
Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589
|| || || ||||||||| || ||||| | |||||| ||| |||||| |||| |
Sbjct 405 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 347
Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646
| || | | |||||| ||||| |||| | | || || || ||||| || |
Sbjct 346 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 289
Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686
| ||||||| ||| || |||||||| |||||||||||
Sbjct 288 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 249
Score = 87.8 bits (96), Expect = 7e-14
Identities = 241/360 (67%), Gaps = 32/360 (9%)
Strand=Plus/Minus
Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311
||||||||||||| | ||||| ||||| || |||||||||||| ||| | | |||
Sbjct 2132 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 2075
Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369
| || | | |||||||| ||||||| | |||||||| | || | | || |||
Sbjct 2074 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 2018
Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429
| | |||| | ||| || ||| | | | ||||||||| | ||| ||
Sbjct 2017 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 1971
Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487
| ||||| |||| || || ||| || |||||||| || ||||||||
Sbjct 1970 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 1915
Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547
| || || || || |||||||| || | |||||||||||||| |||| ||||||| |||
Sbjct 1914 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 1855
Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604
| || | | || | | ||||| ||||||||| | ||||||||||||||
Sbjct 1854 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 1798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19369572761500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |