Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08] 129 sequences; 9,355,550 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq69 603 4e-169 >seq69 Length=5386 Score = 603 bits (668), Expect = 4e-169 Identities = 1096/1599 (69%), Gaps = 71/1599 (4%) Strand=Plus/Plus Query 2810 AAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCC 2869 |||||||||| |||||||||||||| |||||||| |||||||| | ||||||| ||| Sbjct 1 AAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT 60 Query 2870 TGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAATGCTCGTCAGA 2929 ||||| | |||||| || || | | | || || || ||||| | ||||| | Sbjct 61 TGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAA 120 Query 2930 AATTACGCGCAAATGGACTGAAGTGATATG--AAG--AAAGCACGT-----CGTTCTCC- 2979 ||||||| ||| | ||| ||| || || | ||| ||| |||| || || || Sbjct 121 AATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCC 180 Query 2980 TAGTCGTC------------------------------GTAAAGGTGCTCGCCTCTGGTA 3009 | |||||| ||||||| ||||| || ||||| Sbjct 181 TGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTA 240 Query 3010 TGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAGGA--AATTCA 3065 |||||| ||| || |||||||| || |||||| |||| || |||| |||| Sbjct 241 TGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATT-- 298 Query 3066 AATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTCATCTTGCCTT 3125 ||||||||| | |||||| ||| || ||| |||||| || ||||||| ||| Sbjct 299 -ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTT 357 Query 3126 --TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGTTATCGCTGGC 3183 | ||| | || | |||||||||| | || ||||| ||||| |||||||||||| Sbjct 358 CCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGC 415 Query 3184 GATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCGTCGTGGTTTA 3243 || ||||| ||| | || || ||||| ||| | |||||||| || |||||||||| | Sbjct 416 GACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTT 475 Query 3244 GCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCATGTTTATGGC 3303 |||||||| |||| || || |||| || || || | || |||||||| |||||||| Sbjct 476 GCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGT 535 Query 3304 GACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACT 3363 || ||||||||| |||| ||| |||||||||||||| ||||| || |||||| Sbjct 536 GAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC 595 Query 3364 TGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAAC 3420 | | | ||| |||||||| | || | | || || ||| |||| | ||||| Sbjct 596 ACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAA- 654 Query 3421 CGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCC 3480 || |||||| |||| |||| | ||| |||| || || || |||||||| || Sbjct 655 --AATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCG 712 Query 3481 CCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGT 3540 |||||||||||||| ||||||||||| ||||| | | |||||| | |||||||||||| Sbjct 713 CCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGT 772 Query 3541 TATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACC 3600 ||| | |||||||||||||| || ||||| |||||| |||||||||| ||||| || || Sbjct 773 TATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACT 832 Query 3601 AAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCC 3660 | | || ||||| | | | || || ||||| ||||||||| ||||||| Sbjct 833 GAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCT 892 Query 3661 GCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGAT 3720 |||||||| | | || ||||| || || ||| |||||| ||||||||||||| |||| Sbjct 893 GCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGAT 952 Query 3721 GTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTT 3780 ||||| || ||||| ||| |||||| ||||| || || ||||| || || ||||| Sbjct 953 GTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTC 1012 Query 3781 ATGCACACCGACTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTT 3840 |||| | | | ||||||| || || || || ||||| || || |||||| | || | Sbjct 1013 ATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTA 1072 Query 3841 GGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTG 3900 || || || |||||||| || || ||||| | |||||| || |||||||| ||||| || Sbjct 1073 GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTT 1132 Query 3901 CCTGAGCATGGTGTCATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTG 3960 ||||||||||| ||| | ||| | || || |||| || ||||||| | Sbjct 1133 CCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA 1192 Query 3961 GAGCACCATTATCTTGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCG 4020 ||| || || ||| | ||| | || || |||||||| ||||||||||||| Sbjct 1193 GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCT 1252 Query 4021 GCTCTGATTGGTAACTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGG 4079 | | || ||| |||||||| || || || ||| ||| | ||| | |||||| ||| Sbjct 1253 GTTTTGTATGGCAACTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGG 1311 Query 4080 TCGTTCTGGTATTAAGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTA 4139 | ||| || ||| |||| |||| ||| | ||||||||| | ||| || Sbjct 1312 TGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTA 1371 Query 4140 CGTTAACTTTAAGTATCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTAC 4199 ||| | ||||| | | | || ||||| ||| || | || ||| Sbjct 1372 TGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC------- 1424 Query 4200 ATCTACTGGTGATAATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTG 4259 || |||||| || | || ||| | ||| |||| || || || ||||| || Sbjct 1425 --CTTCTGGTG---ATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTG 1479 Query 4260 CTTCCAGTCTCAGCAGTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTA 4319 |||||||| |||||| | |||||||| | |||| | | ||| || | ||||| Sbjct 1480 TTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTA 1539 Query 4320 TCGCCATATGCCTACTGTACGTGATTCCATTATGACCTC 4358 |||| || |||| || || ||||| || ||||| || Sbjct 1540 TCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 1578 Score = 284 bits (314), Expect = 5e-73 Identities = 211/247 (85%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 5137 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 5196 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 5197 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 5256 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5257 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 5316 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 5317 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 5376 Query 2800 GAGTTTA 2806 || |||| Sbjct 5377 GAATTTA 5383 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 3861 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3920 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 3921 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3980 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 3981 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4040 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 4041 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4098 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 4099 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4157 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 4158 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4217 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 4218 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4255 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 2752 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 2811 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 2812 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 2866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19363171899156