Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08] 129 sequences; 9,355,550 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq69 675 0.0 >seq69 Length=5386 Score = 675 bits (748), Expect = 0.0 Identities = 1114/1597 (70%), Gaps = 70/1597 (4%) Strand=Plus/Plus Query 2809 AAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCC 2868 ||||||||||||||||||||||||| |||||||| |||||||| | ||||||| ||| Sbjct 1 AAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT 60 Query 2869 TGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAATGCTCGTCAGA 2928 ||||| | |||||| || || | | | ||| || ||||| || | ||||| | Sbjct 61 TGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAA 120 Query 2929 AATTACGCGCAAATGGGTTGA---AATG---ATATGAAAAAAGCACGT-----CGTTCTC 2977 ||||||| ||| | || ||| |||| | | | ||||| |||| || || | Sbjct 121 AATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTCTGGCGCTCGC 178 Query 2978 C-TAGTCGTC------------------------------GTAAAGGTGCTCGCCTCTGG 3006 | | |||||| ||||||| ||||| || ||| Sbjct 179 CCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGG 238 Query 3007 TATGTAGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTAAGGATTATTA 3062 |||||||| ||| || |||||||| ||| |||||| ||| ||| ||||| | | Sbjct 239 TATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATT 298 Query 3063 ATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCATCTTG-CTT- 3120 ||||||||| | |||||| || || ||| |||||| || ||||||| ||| Sbjct 299 ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTC 358 Query 3121 -TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGTTATCGCTGGC 3179 ||| ||| | || ||||||||| | | || ||||| ||||| |||||||||||| Sbjct 359 CTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGC 415 Query 3180 GATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTA 3239 || ||||| ||| | || || ||||| ||| | ||||||||||| |||||||||| | Sbjct 416 GACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTT 475 Query 3240 GCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCATGTTTATGGT 3299 || ||||| |||| || ||| |||| ||||| ||| | || |||||||| ||||||||| Sbjct 476 GCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGT 535 Query 3300 GATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACT 3359 || ||||||||| | || ||| ||||||||| |||| | || || || | |||| Sbjct 536 GAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC 595 Query 3360 ACTACTAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGT 3419 |||||| ||| || |||| | || | |||| || ||| ||| | | ||| Sbjct 596 ACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA 655 Query 3420 ATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCG 3479 || |||||| |||| |||| |||| ||||||| ||||| |||||||| |||||| Sbjct 656 ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCG 715 Query 3480 TGGATGCCTGAGCGTACTGAAGCTAATCCT-TCAAACTTAGATCGTGATGATTCTCGTTA 3538 ||||||||||| ||||| || ||||| ||| | |||| ||| |||||| ||||||| Sbjct 716 TGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTA 774 Query 3539 TGGATTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAA 3598 ||| |||||||| |||||||| |||| |||||| ||||||| |||||||| || ||| | Sbjct 775 TGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGA 834 Query 3599 GCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGC 3658 ||| || |||||| | | | || || ||||| ||||||||| |||| || || Sbjct 835 GCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGC 894 Query 3659 TTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGT 3718 |||||| | | || ||||| || || ||| ||| || ||||||||||||| |||||| Sbjct 895 TTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGT 954 Query 3719 TATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTAT 3778 ||| || ||||| ||| |||||| ||||| || || ||||| || || ||||| || Sbjct 955 TATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCAT 1014 Query 3779 GCATACCGATTTTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGG 3838 || | || | ||||| || || || || ||||| || || |||||| | || | || Sbjct 1015 GCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGG 1074 Query 3839 ACAGTTTTCGGGGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCC 3898 |||||||| || || ||||||||||| | |||||| || |||||||| ||||| || || Sbjct 1075 CCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCC 1134 Query 3899 TGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGA 3958 ||||||||| ||| | ||| | ||| ||||| || ||||||| || || Sbjct 1135 TGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGA 1194 Query 3959 GCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGC 4018 | ||| || ||| | | | ||||||||||||||| ||||||| ||||| | Sbjct 1195 GATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGT 1254 Query 4019 TTTGATTGGTAATTTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCG 4078 |||| ||| || |||||||||||||| |||||| |||| |||||||| |||| Sbjct 1255 TTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGA 1314 Query 4079 CCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGT 4138 || | ||| ||||| |||| ||| | ||||||||| | || ||||| Sbjct 1315 TTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGT 1374 Query 4139 TAACTAC-AAGTATCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGA 4197 | || | ||||| | ||||| || ||||| ||| || | || ||| Sbjct 1375 T-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC--------- 1424 Query 4198 CTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTT 4257 || ||||||| | |||| || | || ||| ||| |||| ||| | |||| Sbjct 1425 CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTT 1481 Query 4258 TCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATC 4317 ||||||| |||||| | |||||||||| ||||| | | |||||| | ||||||| Sbjct 1482 TCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATC 1541 Query 4318 GCCATATTCCTACTGTTCGTGATTCTATTATGACCTC 4354 || || | || || ||| ||||| || ||||| || Sbjct 1542 GCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 1578 Score = 279 bits (308), Expect = 2e-71 Identities = 210/247 (85%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 5137 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 5196 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 5197 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 5256 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 5257 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 5316 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 5317 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 5376 Query 2799 GAGTTTA 2805 || |||| Sbjct 5377 GAATTTA 5383 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 3861 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3920 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 3921 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3980 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 3981 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4040 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 4041 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4098 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 4099 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4157 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 4158 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 4215 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 4216 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4255 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Plus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 2372 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 2429 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 2430 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 2486 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 2487 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 2533 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 2534 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 2589 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 2590 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 2649 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 2650 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 2706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19369571889868