Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08] 129 sequences; 9,355,550 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq69 637 2e-179 >seq69 Length=5386 Score = 637 bits (706), Expect = 2e-179 Identities = 1108/1599 (69%), Gaps = 74/1599 (5%) Strand=Plus/Plus Query 2833 AAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCTTCGCGTACACCT 2892 |||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct 1 AAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT 60 Query 2893 TGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAGAATGCTCGTCAG 2951 ||||||| || ||| || || || |||| ||| ||||| || | ||||| Sbjct 61 TGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAAAACGTGCGTCAA 119 Query 2952 AAACTTCGTGCAAGTGGAGTAATGTAATATG--------AAGAAAGCTC-GTCGTTC-CC 3001 ||| | |||||| ||||| ||||||| | || || | || | || || || Sbjct 120 AAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCC 179 Query 3002 CTTCTCGT---------------------------AAG---AAAGGCGCTCGTCTCTGGT 3031 || |||| ||| |||||||||||||| |||| Sbjct 180 CTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGT 239 Query 3032 ATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCCCTA---TAAGGATTCTTAA 3088 ||||||| ||| ||||||||||| ||||||||||||||| | ||||| | | Sbjct 240 ATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTA 299 Query 3089 ATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGACCTTTCTCATCTGGTTTTT 3148 |||| || | |||||| ||| || ||||| || || |||||||| ||||| | || Sbjct 300 -TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTC 358 Query 3149 GATGCAGGCAAAATTGGTCGTTTAAAGGTTGTTTCTTGGACTCCTGTTGTTGCAGGTGAT 3208 ||| || | ||||||||| | | |||| ||||| ||| | || || || Sbjct 359 CTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC 418 Query 3209 TCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCCCCGCTTCGTCGTGGCCTTGCT 3268 || || ||| | || |||||||| | || ||||| || | ||||||||||||||| Sbjct 419 TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCT 478 Query 3269 GTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCTCATCGTCATGTATATGGTGAG 3328 |||||||| ||| ||| | || || |||||||||||||||||||| || |||||||| Sbjct 479 ATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAA 538 Query 3329 CAGTGGATTGATTTTATGAAGCAAGGTGTTGATGCTGCTCCTTTGGCCCCTGTTCAGTGC 3388 ||||||||| | || |||||| | |||||| |||| ||||| | | ||||| | | Sbjct 539 CAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAA---C 595 Query 3389 TCTCGCGGTTGGGATAGTGCTCAG------TATCTTGCTACTATTCCGTCTAGTAACTTA 3442 || |||| ||| || || | ||||| || ||| || || | Sbjct 596 ACTACTGGTT---ATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAAT 652 Query 3443 AAGGTTCCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTACAATAATTACTTTAAAG 3500 || | |||||| ||| || ||| ||||| |||| || || || || || ||||||| Sbjct 653 AAAATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAG 710 Query 3501 CTCCGTGGATGGATGACCTGACTTATGCCAACCCGTCTAATATGGAGGGTGAAGATGTTC 3560 | ||||||||| ||||| || | || ||||| | | | | || |||| || Sbjct 711 CGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTC 770 Query 3561 GTTTTGGTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGCTTCCTCCGGATA 3620 ||| |||| | ||| || | | |||| ||||||||||||||||||||||| || | Sbjct 771 GTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGA 830 Query 3621 CTGAAACCTCTCATTCTATGGAGACTGAAACCAACTCCATTGACATTATGGGTTTGCAGG 3680 |||| |||| ||| |||| |||| || ||||||||||||||| |||| | Sbjct 831 CTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAG 890 Query 3681 CCGCTTATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTG 3740 | ||||||||| | || |||||||| || || ||||||||||||||| ||||| | || Sbjct 891 CTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATG 950 Query 3741 ATATTGTTAACGAATTTGGAGGTAGTACTTCTTATGATGCGGATAATCGTCCTTTGCTTG 3800 || || || ||||||||||| || |||||||| || || || |||||||| |||| Sbjct 951 ATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTG 1010 Query 3801 TTATGCATTCTGAGTTCTGGGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTC 3860 | |||| ||| | ||||||| || |||||||||||||| || || ||||||| || Sbjct 1011 TCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGT 1070 Query 3861 TCGGTCAGTTCTCCGGTCGTGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCT 3920 | || ||||| || |||||||| || ||||| | ||| ||||| || ||||| ||||| Sbjct 1071 TAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTG 1130 Query 3921 GCCCTGAGCATGGCACTATGTTCACACTCGCATTGGTCCGCTTCCCGCCGACT--CATGA 3978 |||||||||||||||||||| || || || | || || || ||||| ||| | | Sbjct 1131 TTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTA 1190 Query 3979 AATGGAGATGCATTACTTAGTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGA 4038 || ||||| || ||| | | ||||| | |||||||||||| ||| | ||| | || Sbjct 1191 AA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGA 1248 Query 4039 CCCTGCTTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATT 4097 ||||| |||| ||||| |||||||| || ||||| || |||| | | |||| || Sbjct 1249 CCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTT 1307 Query 4098 CTGGAAGTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCT 4156 |||| | | | ||||||||||| ||||| |||||||||||||| |||| |||| Sbjct 1308 CTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT 1366 Query 4157 GATCG--CGTTGCATTGCCGTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTC 4214 ||| ||| | | ||| || |||||| || || || ||| | | | Sbjct 1367 --TCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC 1424 Query 4215 CGTCTGATGATATTAAGCAGCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCC 4274 | |||| |||| | | | ||||| || || || | || || || ||||| Sbjct 1425 CTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCC 1484 Query 4275 AGTCTATGCAGCTTGCGCACTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTA 4334 |||| | ||| | ||| ||||||| ||| ||| |||||| ||| ||||||| | Sbjct 1485 AGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA 1544 Query 4335 ATATGCCGACCACTCGCGACTCTATTATGACCTCTTGAT 4373 || |||||||||||||||| || || ||||| || |||| Sbjct 1545 ATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 1583 Score = 338 bits (374), Expect = 2e-89 Identities = 226/252 (90%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 5135 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 5194 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 5195 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 5254 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5255 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 5314 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 5315 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 5374 Query 2821 CTGAGTTTACGG 2832 |||| ||||||| Sbjct 5375 CTGAATTTACGG 5386 Score = 165 bits (182), Expect = 3e-37 Identities = 278/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352 || |||||| |||| ||||| || | || | ||||| || || || |||| ||| || Sbjct 3861 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3920 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 3921 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3980 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 3981 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4040 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||||| |||| Sbjct 4041 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4098 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 4099 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4157 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 4158 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4217 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 4218 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4255 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 2566 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 2625 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 2626 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 2682 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 2683 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 2742 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 2743 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 2802 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 2803 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 2862 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 2863 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 2919 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 2920 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 2963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19302371987392