Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08] 129 sequences; 9,355,550 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq69 684 0.0 >seq69 Length=5386 Score = 684 bits (758), Expect = 0.0 Identities = 1120/1605 (70%), Gaps = 73/1605 (5%) Strand=Plus/Plus Query 2809 AAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCC 2868 |||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| Sbjct 1 AAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT 60 Query 2869 TGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAAATGCTCGTCAGA 2928 ||||| | |||||| || || | | | ||| || || ||||| | ||||| | Sbjct 61 TGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAA 120 Query 2929 AATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT-----CGTTCTCC 2978 ||||||| ||| | ||| ||| |||| | | ||| ||| |||| || || || Sbjct 121 AATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTTCTGGCGCTCGCC 179 Query 2979 -TAGTCGTC------------------------------GTAAAGGTGCCCGCCTTTGGT 3007 | |||||| ||||||| || || ||||||| Sbjct 180 CTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGT 239 Query 3008 ATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGCTCT--TTAAGGA-AAATTA 3064 ||||||| ||| || |||||||| | |||||| | | || |||| |||||| Sbjct 240 ATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTA 299 Query 3065 AATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTCTCATCTTGCCTT 3124 |||||||| | |||||| ||| || ||| ||||||||| ||||||| ||| Sbjct 300 --TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTT 357 Query 3125 --TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCTGTTATTGCTGGC 3182 | ||| | || |||||||||| | | || ||||| ||||| ||||| |||||| Sbjct 358 CCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGC 415 Query 3183 GATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTA 3242 || ||||| ||| | || || ||||||||| | ||||||||||| |||||||||| | Sbjct 416 GACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTT 475 Query 3243 GCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGCCATGTTTATGGT 3302 ||||||||||||| || || |||| ||||| ||| | || ||||| || ||||||||| Sbjct 476 GCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGT 535 Query 3303 GACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTCCCTTCCGTTACT 3362 || ||||||||| | || ||| ||||||||| ||||| | || ||||| | |||| Sbjct 536 GAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC 595 Query 3363 ACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGT 3422 |||||| ||| || | || | || | |||| || ||| ||| | | ||| Sbjct 596 ACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA 655 Query 3423 ATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCG 3482 || |||||| |||| |||| |||| ||||||| ||||| |||||||| |||||| Sbjct 656 ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCG 715 Query 3483 TGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCG 3538 ||||||||||| ||||| || ||||| ||| ||| ||| | | |||||| |||| Sbjct 716 TGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCG 771 Query 3539 CTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAAC 3598 ||||| ||||||||||||||||| |||| |||||| ||||||| |||||||| || || Sbjct 772 TTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC 831 Query 3599 TAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGC 3658 | |||| || |||||| | | | || || ||||| ||||||||| |||| || Sbjct 832 TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGC 891 Query 3659 CGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGA 3718 |||||||| | | |||||||| || || ||| ||| |||||||||||||| | ||| Sbjct 892 TGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA 951 Query 3719 TGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGT 3778 |||||| || ||||| ||| |||||| ||||| || || ||||| || || ||||| Sbjct 952 TGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGT 1011 Query 3779 TATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCT 3838 |||| | | || ||||||| || || || || ||||| || || |||||| | || | Sbjct 1012 CATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTT 1071 Query 3839 CGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGT 3898 || |||||||| ||||| || |||||||| | |||||| || ||||| || ||||| || Sbjct 1072 AGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGT 1131 Query 3899 GCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTT 3958 || |||||||| ||| | ||| | ||| ||||| || ||||||| || Sbjct 1132 TCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAA 1191 Query 3959 GGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCC 4018 ||| ||| || ||| | | | ||||||||||||||| |||| || ||||| Sbjct 1192 AGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCC 1251 Query 4019 GGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGG 4078 | |||| ||| || |||||||| ||||| |||||| ||||| |||||||| ||| Sbjct 1252 TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGG 1311 Query 4079 TCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTA 4138 | | || | ||| ||||| |||| ||| | ||||||||| | || || Sbjct 1312 TGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTA 1371 Query 4139 TGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTA 4197 |||| || | ||||| | |||||||| || || ||| || | || ||| Sbjct 1372 TGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC------ 1424 Query 4198 CGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCT 4257 || ||||||| | |||| || | || ||| ||| |||| ||| | | Sbjct 1425 ---CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGT 1478 Query 4258 GTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTT 4317 |||||||||| |||||| | |||||||||| ||||| | | |||||| | |||| Sbjct 1479 GTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT 1538 Query 4318 ATCGTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 |||| || | || || ||| ||||| || ||||| || |||| Sbjct 1539 ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 1583 Score = 269 bits (298), Expect = 1e-68 Identities = 209/249 (84%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 5135 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 5194 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 5195 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 5254 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 5255 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 5314 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 5315 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 5374 Query 2797 CGGAGTTTA 2805 | || |||| Sbjct 5375 CTGAATTTA 5383 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 3861 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3920 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 3921 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3980 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 3981 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4040 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 4041 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4098 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 4099 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4157 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 4158 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4217 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 4218 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4255 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Plus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 2567 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 2626 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 2627 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 2681 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 2682 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 2740 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 2741 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 2799 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 2800 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 2859 Query 5762 CGTCCAT 5768 |||| || Sbjct 2860 CGTCTAT 2866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19385571866648