Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016415.1_202016-02-08] 151 sequences; 9,357,640 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq60 737 0.0 >seq60 Length=5386 Score = 737 bits (816), Expect = 0.0 Identities = 912/1245 (73%), Gaps = 57/1245 (5%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 4149 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 4208 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 4209 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 4268 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 4269 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 4328 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 4329 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 4388 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 4389 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 4448 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 4449 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 4508 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGATATG--AAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || || | ||| ||| |||| Sbjct 4509 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 4568 Query 2972 -CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGCTC 2999 || || || | |||||| ||||||| |||| Sbjct 4569 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 4628 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 4629 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 4688 Query 3058 GA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 || |||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 4689 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 4745 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 |||||| ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 4746 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 4803 Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCG 3233 |||||||||||| ||||| ||| | || || ||||| ||| | |||||||| || |||| Sbjct 4804 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 4863 Query 3234 TCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCA 3293 |||||| | |||||||| |||| || || |||| || || || | || |||||||| Sbjct 4864 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 4923 Query 3294 TGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCC 3353 |||||||| || ||||||||| |||| ||| |||||||||||||| ||||| || Sbjct 4924 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC 4983 Query 3354 TTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG- 3412 |||||| | | | ||| |||||||| | || | | || || ||| |||| Sbjct 4984 GACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGA 5043 Query 3413 --CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAACTA 3470 | ||||| || |||||| |||| |||| | ||| |||| || || || ||||| Sbjct 5044 TACCAATAA---AATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTA 5100 Query 3471 TTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGA 3530 ||| || |||||||||||||| ||||||||||| ||||| | | |||||| | || Sbjct 5101 TTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGA 5160 Query 3531 TGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCC 3590 ||||||||||||| | |||||||||||||| || ||||| |||||| |||||||||| || Sbjct 5161 TGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCC 5220 Query 3591 TCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCATTGATATTATGGG 3650 ||| || || | | || ||||| | | | || || ||||| |||||||| Sbjct 5221 TCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGG 5280 Query 3651 TTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAGCG 3710 | ||||||| |||||||| | | || ||||| || || ||| |||||| |||||||| Sbjct 5281 TCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCG 5340 Query 3711 TTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGA 3755 ||||| ||||||||| || ||||| ||| |||||| ||||| Sbjct 5341 TTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGA 5385 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 2873 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2932 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 2933 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2992 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 2993 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3052 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 3053 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3110 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 3111 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 3169 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 3170 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 3229 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 3230 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 3267 Score = 149 bits (164), Expect = 2e-32 Identities = 396/603 (66%), Gaps = 14/603 (2%) Strand=Plus/Plus Query 3757 GCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACGACGTT 3816 || || ||||| || || ||||| |||| | | | ||||||| || || || || ||| Sbjct 1 GCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT 60 Query 3817 GACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAA 3876 || || || |||||| | || | || || || |||||||| || || ||||| | |||| Sbjct 61 GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA 120 Query 3877 CACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGGCTCTGATT 3936 || || |||||||| ||||| || ||||||||||| ||| | ||| | || || || Sbjct 121 CATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTT 180 Query 3937 CGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTGCTGGTAAGTCTCAGTTAACC 3996 || || ||||||| | ||| || || ||| | ||| | || || Sbjct 181 CGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACT 240 Query 3997 TATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACTTGCCTCCTCGCGAGATTAGT 4056 |||||||| ||||||||||||| | | || ||| |||||||| || || || ||| Sbjct 241 TATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATT-TC 299 Query 4057 TATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAGATTAAAGTTGCCGAGTCTAT 4115 ||| | ||| | |||||| |||| ||| || ||| |||| |||| ||| | Sbjct 300 TATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCA 359 Query 4116 TTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTATCATGATTTGCATGGATTCCC 4175 ||||||||| | ||| || ||| | ||||| | | | || ||||| Sbjct 360 GTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCC 419 Query 4176 GTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAATCTTCAGGAAGCTATCCTTGT 4235 ||| || | || ||| || |||||| || | || ||| | ||| | Sbjct 420 ATTCATTCAGGAACCGC---------CTTCTGGTG---ATTTGCAAGAACGCGTACTTAT 467 Query 4236 TCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCAGTTGCTACAGTGGAACAAACA 4295 ||| || || || ||||| || |||||||| |||||| | |||||||| | || Sbjct 468 TCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCA 527 Query 4296 GGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTACTGTACGTGATTCCATTATGAC 4355 || | | ||| || | ||||||||| || |||| || || ||||| || ||||| Sbjct 528 GGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGAC 587 Query 4356 CTC 4358 || Sbjct 588 TTC 590 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 1764 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 1823 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 1824 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 1878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19363167106764