Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016415.1_202016-02-08]
151 sequences; 9,357,640 total letters
Query= NC_001730.1
Length=6089
Score E
Sequences producing significant alignments: (Bits) Value
seq60 751 0.0
>seq60
Length=5386
Score = 751 bits (832), Expect = 0.0
Identities = 916/1243 (74%), Gaps = 56/1243 (5%)
Strand=Plus/Plus
Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618
|||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | ||
Sbjct 4149 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 4208
Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678
|||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||
Sbjct 4209 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 4268
Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 4269 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 4328
Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798
|||||||||||||||||||||||||||||||| || || || ||| | |||||||||||
Sbjct 4329 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 4388
Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858
|| |||| |||||||||||||||||||||||||| |||||||| |||||||| | |||
Sbjct 4389 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 4448
Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918
|||| ||| ||||| | |||||| || || | | | ||| || ||||| ||
Sbjct 4449 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 4508
Query 2919 GCTCGTCAGAAATTACGCGCAAATGGGTTGA---AATG---ATATGAAAAAAGCACGT-- 2970
| ||||| |||||||| ||| | || ||| |||| | | | ||||| ||||
Sbjct 4509 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 4566
Query 2971 ---CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGC 2996
|| || || | |||||| ||||||| ||
Sbjct 4567 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 4626
Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTA 3052
||| || ||||||||||| ||| || |||||||| ||| |||||| ||| |||
Sbjct 4627 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 4686
Query 3053 AGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCA 3112
||||| | | ||||||||| | |||||| || || ||| |||||| || ||
Sbjct 4687 AGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA 4746
Query 3113 TCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGT 3169
||||| ||| ||| ||| | || ||||||||| | | || ||||| ||||| ||
Sbjct 4747 TCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 4803
Query 3170 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCG 3229
|||||||||||| ||||| ||| | || || ||||| ||| | ||||||||||| ||||
Sbjct 4804 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 4863
Query 3230 TCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCA 3289
|||||| | || ||||| |||| || ||| |||| ||||| ||| | || ||||||||
Sbjct 4864 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 4923
Query 3290 TGTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCC 3349
||||||||||| ||||||||| | || ||| ||||||||| |||| | || || ||
Sbjct 4924 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC 4983
Query 3350 TTCCGTTACTACTACTAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAA 3409
| |||| |||||| ||| || |||| | || | |||| || ||| ||| |
Sbjct 4984 GACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGA 5043
Query 3410 GAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTT 3469
| ||| || |||||| |||| |||| |||| ||||||| ||||| ||||||||
Sbjct 5044 TACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTT 5103
Query 3470 CCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCT-TCAAACTTAGATCGTGATG 3528
||||||||||||||||| ||||| || ||||| ||| | |||| ||| ||||
Sbjct 5104 TAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATG 5162
Query 3529 ATTCTCGTTATGGATTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTC 3588
|| |||||||||| |||||||| |||||||| |||| |||||| ||||||| |||||||
Sbjct 5163 ATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTC 5222
Query 3589 CGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTT 3648
| || ||| |||| || |||||| | | | || || ||||| |||||||||
Sbjct 5223 CTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTC 5282
Query 3649 TGCAGGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTT 3708
|||| || |||||||| | | || ||||| || || ||| ||| || ||||||||||
Sbjct 5283 TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTT 5342
Query 3709 ACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGA 3751
||| ||||||||| || ||||| ||| |||||| |||||
Sbjct 5343 ACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGA 5385
Score = 203 bits (224), Expect = 1e-48
Identities = 409/603 (68%), Gaps = 14/603 (2%)
Strand=Plus/Plus
Query 3753 GCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTTGGGCTTCCGGTTACGACGTT 3812
|| || ||||| || || ||||| |||| | || | ||||| || || || || |||
Sbjct 1 GCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT 60
Query 3813 GACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCGAGTTCAACAGACGTTTAAA 3872
|| || || |||||| | || | || |||||||| || || ||||||||||| | ||||
Sbjct 61 GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA 120
Query 3873 CACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGATGCTGGTT 3932
|| || |||||||| ||||| || ||||||||||| ||| | ||| | ||| |||
Sbjct 121 CATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTT 180
Query 3933 CGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACT 3992
|| || ||||||| || ||| ||| || ||| | | | |||||||
Sbjct 181 CGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACT 240
Query 3993 TATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTTGCCGCCGCGTGAGATTTCT 4052
|||||||| ||||||| ||||| | |||| ||| || |||||||||||||| ||||||
Sbjct 241 TATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCT 300
Query 4053 TATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGATTAAGGTTGCCGAGTCTATC 4112
|||| |||||||| |||| || | ||| ||||| |||| ||| |
Sbjct 301 ATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAG 360
Query 4113 TGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAGGGTTTCCC 4171
||||||||| | || |||||| || | ||||| | ||||| || |||||
Sbjct 361 TGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCC 419
Query 4172 GTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCAT 4231
||| || | || ||| || ||||||| | |||| || | || ||
Sbjct 420 ATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTAT 467
Query 4232 TGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCA 4291
| ||| |||| ||| | ||||||||||| |||||| | |||||||||| |||
Sbjct 468 TCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCA 527
Query 4292 GGCTCGTTATAATGTTAATGTTTATCGCCATATTCCTACTGTTCGTGATTCTATTATGAC 4351
|| | | |||||| | ||||||||| || | || || ||| ||||| || |||||
Sbjct 528 GGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGAC 587
Query 4352 CTC 4354
||
Sbjct 588 TTC 590
Score = 158 bits (174), Expect = 5e-35
Identities = 280/400 (70%), Gaps = 10/400 (3%)
Strand=Plus/Plus
Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351
|| ||||| | || |||||||| | || | || || ||||| || |||| || ||
Sbjct 2873 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2932
Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411
|| || ||||||||| | ||||| |||||| | | ||||||| ||||| ||
Sbjct 2933 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2992
Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471
|| ||||| || ||| ||||| || ||||||||||| ||| |||||||||| |||
Sbjct 2993 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3052
Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529
| || | |||| | || |||||||||| || | ||||| | ||||||| ||||
Sbjct 3053 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3110
Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589
|| || || ||||||||| || ||||| | |||||| ||| |||||| |||| |
Sbjct 3111 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 3169
Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646
| || | | |||||| ||||| |||| | | || || || ||||| || |
Sbjct 3170 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 3227
Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686
| ||||||| ||| || |||||||| |||||||||||
Sbjct 3228 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 3267
Score = 87.8 bits (96), Expect = 7e-14
Identities = 241/360 (67%), Gaps = 32/360 (9%)
Strand=Plus/Plus
Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311
||||||||||||| | ||||| ||||| || |||||||||||| ||| | | |||
Sbjct 1384 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 1441
Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369
| || | | |||||||| ||||||| | |||||||| | || | | || |||
Sbjct 1442 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 1498
Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429
| | |||| | ||| || ||| | | | ||||||||| | ||| ||
Sbjct 1499 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 1545
Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487
| ||||| |||| || || ||| || |||||||| || ||||||||
Sbjct 1546 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 1601
Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547
| || || || || |||||||| || | |||||||||||||| |||| ||||||| |||
Sbjct 1602 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 1661
Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604
| || | | || | | ||||| ||||||||| | ||||||||||||||
Sbjct 1662 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 1718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19369567095892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |