Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016415.1_202016-02-08] 151 sequences; 9,357,640 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq60 722 0.0 >seq60 Length=5386 Score = 722 bits (800), Expect = 0.0 Identities = 912/1249 (73%), Gaps = 62/1249 (5%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 4147 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 4206 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 4207 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 4266 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4267 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 4326 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 4327 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 4386 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 4387 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 4446 Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939 |||||| ||||||||||| || ||| || || || |||| ||| ||||| Sbjct 4447 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 4505 Query 2940 AATGCTCGTCAGAAACTTCGTGCA-----AGTGGAGTAATGT---AATATGAAGAAAGCT 2991 || | ||||| ||| | |||||| |||| ||||||| || | || || | | Sbjct 4506 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTT 4565 Query 2992 C-GTCGTTC-CCCTTCTCGT----------------------AAG--------AAAGGCG 3019 | | || || |||| |||| ||| ||||||| Sbjct 4566 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 4625 Query 3020 CTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCCCT---AT 3076 ||||||| ||||||||||| ||| ||||||||||| ||||||||||||||| | Sbjct 4626 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 4685 Query 3077 AAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGACCTTTCT 3136 ||||| | ||||| || | |||||| ||| || ||||| || || |||||||| Sbjct 4686 GAGGATAAAT-TATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCC 4744 Query 3137 CATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTAAAGGTTGTTTCTTGGACTCCTGTT 3196 ||||| | || ||| || | ||||||||| | | |||| ||||| ||| Sbjct 4745 CATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTT 4804 Query 3197 GTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCCCCGCTTCGT 3256 | || || || || || ||| | || |||||||| | || ||||| || | ||| Sbjct 4805 ATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGT 4864 Query 3257 CGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCTCATCGTCAT 3316 |||||||||||| |||||||| ||| ||| | || || |||||||||||||||||||| Sbjct 4865 CGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC 4924 Query 3317 GTATATGGTGAGCAGTGGATTGATTTTATGAAGCAAGGTGTTGATGCTGCTCCTTTGGCC 3376 || |||||||| ||||||||| | || |||||| | |||||| |||| ||||| | | Sbjct 4925 GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCG 4984 Query 3377 CCTGTTCAGTGCTCTCGCGGTTGGGATAGTGCTCA------GTATCTTGCTACTATTCCG 3430 ||||| | | || |||| ||| || || | ||||| || ||| Sbjct 4985 ACTGTTAA---CACTACTGGTT---ATATTGACCATGCCGCTTTTCTTGGCACGATTAAC 5038 Query 3431 TCTAGTAACTTAAAGGTTCCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTACAATA 3488 || || | || | |||||| ||| || ||| ||||| |||| || || || | Sbjct 5039 CCTGATACCAATAAAATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACA 5096 Query 3489 ATTACTTTAAAGCTCCGTGGATGGATGACCTGACTTATGCCAACCCGTCTAATATGGAGG 3548 | || |||||||| ||||||||| ||||| || | || ||||| | | | | Sbjct 5097 ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATC 5156 Query 3549 GTGAAGATGTTCGTTTTGGTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGC 3608 || |||| ||||| |||| | ||| || | | |||| |||||||||||||||| Sbjct 5157 AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGC 5216 Query 3609 TTCCTCCGGATACTGAAACCTCTCATTCTATGGAGACTGAAACCAACTCCATTGACATTA 3668 ||||||| || ||||| |||| ||| |||| |||| || |||||||||| Sbjct 5217 TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTA 5276 Query 3669 TGGGTTTGCAGGCCGCTTATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTCATGA 3728 ||||| |||| || ||||||||| | || |||||||| || || ||||||||||||||| Sbjct 5277 TGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGC 5336 Query 3729 CTCGTTATCGTGATATTGTTAACGAATTTGGAGGTAGTACTTCTTATGA 3777 ||||| | |||| || || ||||||||||| || |||||||| Sbjct 5337 AGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGA 5385 Score = 257 bits (284), Expect = 6e-65 Identities = 423/601 (70%), Gaps = 12/601 (2%) Strand=Plus/Plus Query 3779 GCGGATAATCGTCCTTTGCTTGTTATGCATTCTGAGTTCTGGGCCTCAGGCTATGATGTT 3838 || || || |||||||| ||||| |||| ||| | ||||||| || |||||||||||| Sbjct 1 GCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT 60 Query 3839 GACGGCACCGACCAAAGCTCTCTCGGTCAGTTCTCCGGTCGTGTCCAGCAGACGTTTAAG 3898 || || || ||||||| || | || ||||| || |||||||| || ||||| | ||| Sbjct 61 GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAA 120 Query 3899 CATTCAGTACCGCGATTCTTCTGCCCTGAGCATGGCACTATGTTCACACTCGCATTGGTC 3958 ||||| || ||||| ||||| |||||||||||||||||||| || || || | || Sbjct 121 CATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTT 180 Query 3959 CGCTTCCCGCCGACT--CATGAAATGGAGATGCATTACTTAGTTGGTAAAGAAGATTTGA 4016 || || ||||| ||| | ||| ||||| || ||| | | ||||| | ||||| Sbjct 181 CGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGA 238 Query 4017 CTTATACTGATTTGGCTTGTGACCCTGCTTTG-ATGGCTAACTTGCCTCCTCGTGAGGTT 4075 ||||||| ||| | ||| | ||||||| |||| ||||| |||||||| || ||||| || Sbjct 239 CTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATT 297 Query 4076 AATATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGTGCTAAGTTTAAGATCGCTGAAGGT 4135 |||| | | |||| |||||| | | | ||||||||||| ||||| ||| Sbjct 298 TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGT 357 Query 4136 CAGTGGTATCG-CATGCAGCCTGATCG--CGTTGCATTGCCGTATAACTATCTTGATGGT 4192 ||||||||||| |||| |||| ||| ||| | | ||| || |||||| || Sbjct 358 CAGTGGTATCGTTATGC-GCCT--TCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGC 414 Query 4193 TTTCCGTTCTATAGCGCGATTCCGTCTGATGATATTAAGCAGCGCGTTCTGGTTAATACT 4252 || || ||| | | || |||| |||| | | | ||||| || || Sbjct 415 TTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCAC 474 Query 4253 GATAACTACGATGAGGTTTTCCAGTCTATGCAGCTTGCGCACTGGAATATGCAGACTAAG 4312 || | || || || ||||||||| | ||| | ||| ||||||| ||| ||| Sbjct 475 CATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAA 534 Query 4313 TTTAATTGCACCATTTATCGTAATATGCCGACCACTCGCGACTCTATTATGACCTCTTGA 4372 |||||| ||| ||||||| ||| |||||||||||||||| || || ||||| || ||| Sbjct 535 TTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGA 594 Query 4373 T 4373 | Sbjct 595 T 595 Score = 165 bits (182), Expect = 3e-37 Identities = 278/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352 || |||||| |||| ||||| || | || | ||||| || || || |||| ||| || Sbjct 2873 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2932 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 2933 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2992 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 2993 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3052 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||||| |||| Sbjct 3053 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3110 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 3111 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 3169 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 3170 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 3229 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 3230 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 3267 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 1578 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 1637 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 1638 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 1694 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 1695 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 1754 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 1755 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 1814 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 1815 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 1874 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 1875 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 1931 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 1932 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 1975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19302367210048