Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099305.1_202017-02- 08] 1,022 sequences; 11,528,256 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq349 650 0.0 >seq349 Length=5528 Score = 650 bits (720), Expect = 0.0 Identities = 984/1387 (71%), Gaps = 31/1387 (2%) Strand=Plus/Plus Query 2986 CGTAAAGGTGCCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGG 3045 |||||||| || || |||||||||||||| ||| || |||||||| | |||||| Sbjct 1078 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 1137 Query 3046 GGCTCT--TTAAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTG 3102 | | || |||| |||||| |||||||| | |||||| ||| || ||| Sbjct 1138 CCCCTTACTTGAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC 1195 Query 3103 TTGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTC 3160 ||||||||| ||||||| ||| | ||| | || |||||||||| | | || |||| Sbjct 1196 ATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTC 1253 Query 3161 ATGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCT 3220 | ||||| ||||| |||||||| ||||| ||| | || || ||||||||| | ||||| Sbjct 1254 AACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCT 1313 Query 3221 TTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATAT 3280 |||||| |||||||||| | ||||||||||||| || || |||| ||||| ||| | Sbjct 1314 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGT 1373 Query 3281 TCCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGC 3340 || ||||| || ||||||||||| ||||||||| | || ||| ||||||||| |||| Sbjct 1374 CCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGC 1433 Query 3341 CGCACCACTCCCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTAC 3400 | | || ||||| | |||| |||||| ||| || | || | || | |||| || Sbjct 1434 CACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCAC 1493 Query 3401 TATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTA 3460 ||| ||| | | ||| || |||||| |||| |||| |||| ||||||| || Sbjct 1494 GATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTA 1553 Query 3461 TAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT-- 3518 ||| |||||||| ||||||||||||||||| ||||| || ||||| ||| ||| Sbjct 1554 TAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---AATGA 1610 Query 3519 --TTAGACCGTGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGT 3576 ||| | | |||||| |||| ||||| ||||||||||||||||| |||| |||||| Sbjct 1611 GCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGA 1669 Query 3577 CTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCA 3636 ||||||| |||||||| || ||| |||| || |||||| | | | || || | Sbjct 1670 CTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTA 1729 Query 3637 TTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTT 3696 |||| ||||||||| |||| || |||||||| | | |||||||| || || ||| || Sbjct 1730 TTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATT 1789 Query 3697 ATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATG 3756 | |||||||||||||| | ||||||||| || ||||| ||| |||||| ||||| | Sbjct 1790 ACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACG 1849 Query 3757 CCGATAACCGACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTG 3816 | || ||||| || || ||||| |||| | | || ||||||| || || || || |||| Sbjct 1850 CTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTG 1909 Query 3817 ACGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAAC 3876 | || || |||||| | || | || |||||||| ||||| || |||||||| | ||||| Sbjct 1910 ATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAAC 1969 Query 3877 ACTCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTC 3936 | || ||||| || ||||| || || |||||||| ||| | ||| | ||| |||| Sbjct 1970 ATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTC 2029 Query 3937 GCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTT 3996 | || ||||||| || ||| ||| || ||| | | | |||||||| Sbjct 2030 GTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTT 2089 Query 3997 ATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTT 4056 ||||||| |||| || ||||| | |||| ||| || |||||||| ||||| |||||| Sbjct 2090 ATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTA 2149 Query 4057 ATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCT 4116 ||||| |||||||| |||| | || | ||| ||||| |||| ||| | | Sbjct 2150 TGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGT 2209 Query 4117 GGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCG 4175 |||||||| | || |||||| || | ||||| | |||||||| || || Sbjct 2210 GGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCA 2268 Query 4176 TTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATT 4235 ||| || | || ||| || ||||||| | |||| || | || ||| Sbjct 2269 TTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATT 2316 Query 4236 GACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAG 4295 ||| |||| ||| | ||||||||||| |||||| | |||||||||| |||| Sbjct 2317 CGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAG 2376 Query 4296 GCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTATTATGACC 4355 | | | |||||| | |||||||| || | || || ||| ||||| || ||||| Sbjct 2377 GTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACT 2436 Query 4356 TCTTGAT 4362 || |||| Sbjct 2437 TCGTGAT 2443 Score = 370 bits (410), Expect = 4e-99 Identities = 318/393 (81%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 557 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 616 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 617 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 676 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 677 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 736 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 796 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 797 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 856 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 857 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 916 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA 2949 | | ||||| |||||||| ||| | ||| ||| Sbjct 917 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGA 949 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 4778 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 4837 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 4838 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 4897 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 4898 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4957 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 4958 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 5015 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 5016 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 5074 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 5075 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 5134 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 5135 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 5172 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Plus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 3484 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 3543 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 3544 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 3598 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 3599 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 3657 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 3658 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 3716 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 3717 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 3776 Query 5762 CGTCCAT 5768 |||| || Sbjct 3777 CGTCTAT 3783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19385377114064