Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pneumocystis_20jirovecii_20[genbank_20GCA_5F000333975.2_202012-12- 19] 358 sequences; 8,179,983 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq310 719 0.0 >seq310 Length=2472 Score = 719 bits (796), Expect = 0.0 Identities = 433/456 (95%), Gaps = 0/456 (0%) Strand=Plus/Plus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 143 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 203 Query 5609 CGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTA 5668 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 204 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 263 Query 5669 GTGCTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5728 ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 264 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 323 Query 5729 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 5788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 383 Query 5789 GACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTTAT 5848 |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct 384 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTAT 443 Query 5849 AAGGATTTTTGTCATTTTCTGCTTACTGGTTAAAAAATAAGCTGATTTAACAAATATTTA 5908 |||| ||||| | |||| || || |||||||||||| ||||||||||||||| ||||| Sbjct 444 AAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTA 503 Query 5909 ACGCGAAATTTAACAAAACATTAACGTTTACAATTT 5944 ||||||| |||||||||| ||||||| ||||||||| Sbjct 504 ACGCGAATTTTAACAAAATATTAACGCTTACAATTT 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20390317877664