Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq138322 178 5e-41 seq5071 145 3e-31 seq141255 113 2e-21 seq46248 105 3e-19 seq86902 96.9 1e-16 seq147810 93.3 2e-15 seq14021 87.8 7e-14 seq95953 84.2 8e-13 seq153508 80.6 1e-11 >seq138322 Length=159 Score = 178 bits (196), Expect = 5e-41 Identities = 125/143 (87%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 2731 CTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGG 2790 |||||||||||||||||||||||||||||||||||||||| || || || ||| | |||| Sbjct 1 CTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGG 60 Query 2791 AAGGCGCGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTG 2850 ||||||| || |||| |||||||||||||||||||||||||| |||||||| ||||||| Sbjct 61 AAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTG 120 Query 2851 AGCTCTTCGCGTACACCCTGCGT 2873 | | ||||||| ||| ||||| Sbjct 121 AATTGTTCGCGTTTACCTTGCGT 143 >seq5071 Length=168 Score = 145 bits (160), Expect = 3e-31 Identities = 134/167 (80%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 3424 CTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGA 3483 ||||| |||| |||| |||| ||||||| ||||| |||||||| |||||||||| Sbjct 168 CTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGA 109 Query 3484 TGCCTGAGCGTACTGAAGCTAATCCT-TCAAACTTAGATCGTGATGATTCTCGTTATGGA 3542 ||||||| ||||| || ||||| ||| | |||| ||| |||||| |||||||||| Sbjct 108 TGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGT 50 Query 3543 TTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCC 3589 |||||||| |||||||| |||| |||||| ||||||| |||||||| Sbjct 49 TTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCC 3 >seq141255 Length=862 Score = 113 bits (124), Expect = 2e-21 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 736 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 795 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 796 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 855 Query 2679 ACGCTGG 2685 ||||||| Sbjct 856 ACGCTGG 862 >seq46248 Length=61 Score = 105 bits (116), Expect = 3e-19 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2700 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 2759 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTATGTTCATCCC 60 Query 2760 G 2760 | Sbjct 61 G 61 >seq86902 Length=53 Score = 96.9 bits (106), Expect = 1e-16 Identities = 53/53 (100%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 2700 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2752 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 53 >seq147810 Length=61 Score = 93.3 bits (102), Expect = 2e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2694 GGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2752 || || |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGCGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq14021 Length=61 Score = 87.8 bits (96), Expect = 7e-14 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2666 TTGTGTTTATGGAACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTT 2725 ||| |||||||| |||||||||||||| || || |||||||||||||||||||||||||| Sbjct 61 TTGCGTTTATGGTACGCTGGACTTTGTAGGTTACCCTCGCTTTCCTGCTCCTGTTGAGTT 2 Query 2726 T 2726 | Sbjct 1 T 1 >seq95953 Length=61 Score = 84.2 bits (92), Expect = 8e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2670 GTTTATGGAACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTAT 2728 |||||||| |||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct 59 GTTTATGGTACGCTGGACTTTGTAGGATCCCCTCGCTTTCCTGCTCCTGTTGAGTTTAT 1 >seq153508 Length=54 Score = 80.6 bits (88), Expect = 1e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 2685 GACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||| || || ||||||||||||||| ||||||||||||||||||||||| Sbjct 54 GACTTTGTAGGATACCCTCGCTTTCCTGCTTCTGTTGAGTTTATTGCTGCCGTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19329834186988