Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baeospora_20myosura_20[genbank_20GCA_5F001179705.1_202015-07-08] 182,489 sequences; 61,019,048 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq138322 181 4e-42 seq5071 138 4e-29 seq181149 127 8e-26 seq46248 105 3e-19 seq86902 96.9 1e-16 seq147810 93.3 2e-15 seq14021 84.2 8e-13 seq153508 80.6 1e-11 seq95953 80.6 1e-11 >seq138322 Length=159 Score = 181 bits (200), Expect = 4e-42 Identities = 126/143 (88%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 2731 CTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGG 2790 |||||||||||||||||||||||||||||||||||||||| || || || ||| | |||| Sbjct 1 CTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGG 60 Query 2791 AAGGCGCGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTG 2850 ||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 AAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTG 120 Query 2851 AGCTCTTCGCGTACACCCTGCGT 2873 | | ||||||| ||| ||||| Sbjct 121 AATTGTTCGCGTTTACCTTGCGT 143 >seq5071 Length=168 Score = 138 bits (152), Expect = 4e-29 Identities = 134/170 (79%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 3427 CTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGA 3486 ||||| |||| |||| |||| ||||||| ||||| |||||||| |||||||||| Sbjct 168 CTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGA 109 Query 3487 TGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCGCTAT 3542 ||||||| ||||| || ||||| ||| ||| ||| | | |||||| |||| ||| Sbjct 108 TGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCGTTAT 53 Query 3543 GGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCC 3592 || ||||||||||||||||| |||| |||||| ||||||| |||||||| Sbjct 52 GGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCC 3 >seq181149 Length=1558 Score = 127 bits (140), Expect = 8e-26 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 5581 CAAAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-T 5639 ||||||||| | ||||||||||||||| || ||||| || |||||| ||||||| | | Sbjct 5 CAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAAT 64 Query 5640 GAATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGA 5699 || ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 65 GAGACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGA 123 Query 5700 TTCTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGT 5759 || ||||| || |||||||||||| ||| | || ||||| || ||||| Sbjct 124 CCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGT 183 Query 5760 TGCGTCCAT 5768 |||||| || Sbjct 184 TGCGTCTAT 192 >seq46248 Length=61 Score = 105 bits (116), Expect = 3e-19 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2700 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 2759 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTATGTTCATCCC 60 Query 2760 G 2760 | Sbjct 61 G 61 >seq86902 Length=53 Score = 96.9 bits (106), Expect = 1e-16 Identities = 53/53 (100%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 2700 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2752 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 53 >seq147810 Length=61 Score = 93.3 bits (102), Expect = 2e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2694 GGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2752 || || |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGCGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq14021 Length=61 Score = 84.2 bits (92), Expect = 8e-13 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2666 TTGTGTTTATGGAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTT 2725 ||| |||||||| ||||||||||||| || || |||||||||||||||||||||||||| Sbjct 61 TTGCGTTTATGGTACGCTGGACTTTGTAGGTTACCCTCGCTTTCCTGCTCCTGTTGAGTT 2 Query 2726 T 2726 | Sbjct 1 T 1 >seq153508 Length=54 Score = 80.6 bits (88), Expect = 1e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 2685 GACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||| || || ||||||||||||||| ||||||||||||||||||||||| Sbjct 54 GACTTTGTAGGATACCCTCGCTTTCCTGCTTCTGTTGAGTTTATTGCTGCCGTC 1 >seq95953 Length=61 Score = 80.6 bits (88), Expect = 1e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2670 GTTTATGGAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTAT 2728 |||||||| ||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct 59 GTTTATGGTACGCTGGACTTTGTAGGATCCCCTCGCTTTCCTGCTCCTGTTGAGTTTAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19345801338968