Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq110700 159 1e-35 seq46459 95.1 5e-16 seq27462 82.4 3e-12 >seq110700 Length=1315 Score = 159 bits (176), Expect = 1e-35 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 2744 CTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCGGAGT 2803 |||||||||||||||||||||| | ||||| || || ||| | ||||||||||| || | Sbjct 1023 CTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAAT 1082 Query 2804 TTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTCGCGT 2863 ||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||||||| Sbjct 1083 TTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGT 1142 Query 2864 ACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAATGCTC 2923 ||| ||||| | |||||| || || | | | || || || ||||| | | Sbjct 1143 TTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGC 1202 Query 2924 GTCAGAAATTACGCGCAAATGGACTGAAGTGAT 2956 |||| |||||||| ||| | ||| ||| || || Sbjct 1203 GTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 1235 >seq46459 Length=120 Score = 95.1 bits (104), Expect = 5e-16 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3520 CTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCT 3579 |||||| | ||||||||||||||| | |||||||||||||| || ||||| |||||| || Sbjct 3 CTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACT 62 Query 3580 GCTCCGCTGCCTCCGGAAAC 3599 |||||||| ||||| || || Sbjct 63 GCTCCGCTTCCTCCTGAGAC 82 >seq27462 Length=653 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 240 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 299 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 300 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19338976418964