Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq110700 394 3e-106 seq27462 163 1e-36 >seq110700 Length=1315 Score = 394 bits (436), Expect = 3e-106 Identities = 409/532 (77%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 1408 CCAAG-TGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAG 1466 ||||| |||||||||||| ||| ||||||||| | || |||||||||||||| || | || Sbjct 3 CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAG 62 Query 1467 AGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGA 1526 || | | || |||||||| ||| |||| ||||||||||||| |||||||||||||| Sbjct 63 AGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGA 122 Query 1527 CGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCTAC 1586 |||| |||||||| ||||| |||||| || || || || || | |||||||| | Sbjct 123 CGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGC 182 Query 1587 AGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAACCA 1646 |||||||||||||||| ||||| ||| |||||| | |||||||||||||||| | | Sbjct 183 AGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGA 242 Query 1647 AAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGA 1706 |||| || ||| | ||||||||| || |||| |||||||||||||||||||||| Sbjct 243 AAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGA 302 Query 1707 CTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTACTT 1766 ||||||| |||||||||| |||||| | || ||| | |||||| |||||||| Sbjct 303 CTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTT 362 Query 1767 TGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGAGA 1825 ||| |||||||||||||| || |||| | ||| ||||||||||||| | || ||||||| Sbjct 363 TGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGA 421 Query 1826 AATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCG 1885 | | | |||||| | || | || ||||||||||||| | || || |||||| | Sbjct 422 AGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTG 481 Query 1886 TGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATC 1937 | ||||||| | | || | ||||||| | ||||| ||||| || |||| Sbjct 482 TTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC 533 Score = 170 bits (188), Expect = 7e-39 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 2223 CTTATTACGTTCATCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGT 2282 ||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| | Sbjct 1023 CTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAAT 1082 Query 2283 TTACCGAAAACATCGTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCT 2342 |||| |||||||| | ||||| || || || || ||||||||| ||||| ||||||| | Sbjct 1083 TTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGT 1142 Query 2343 TCACTCTTCTTGTTCGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACATCC 2402 | || | | ||| ||||| ||||||| || || | | |||| ||| |||| | | Sbjct 1143 TTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGC 1202 Query 2403 GTGAACAGTTACGCGCTCAAGGTGTCATGTAA 2434 || || | ||||| || |||| || |||||| Sbjct 1203 GTCAAAAATTACGTGCAGAAGGAGTGATGTAA 1234 >seq27462 Length=653 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 263 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 322 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 323 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 382 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 383 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 442 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 443 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 495 Score = 93.3 bits (102), Expect = 1e-15 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 4870 AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACTATCTCGCCGCCGCATTCCCCGAG 4929 ||||||||| |||| || || ||||| || || ||||| || || ||||| || ||| Sbjct 38 AAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAG 97 Query 4930 CTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTAGTCCAGGCATGCAAGACGCTGGC 4989 || || | ||||| ||||||||||||| ||||| | | || ||| ||||| || Sbjct 98 CTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGA 157 Query 4990 TTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTGAC 5028 || | ||||| || ||||| || || ||||| || ||| Sbjct 158 TTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGAC 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17712830342030