Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq110700 414 3e-112 seq27462 167 8e-38 >seq110700 Length=1315 Score = 414 bits (458), Expect = 3e-112 Identities = 416/536 (78%), Gaps = 11/536 (2%) Strand=Plus/Plus Query 1408 CCAAG-TGGGCTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAG 1466 ||||| |||| ||||||| ||| ||||||||| | || |||||||||||||| || | || Sbjct 3 CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAG 62 Query 1467 AGCTACGATTGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGA 1526 || | |||||||||||| ||| |||| ||||||||||||| |||||||||||||| Sbjct 63 AGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGA 122 Query 1527 CGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGTCAAA----TCGGAGTGTCCAAC 1582 |||| |||||||| ||||| |||||| || || | ||| | || || |||||| Sbjct 123 CGACAAATCTGCTCAAATTTATGCGCGCTTCGA----TAAAAATGATTGGCGTATCCAAC 178 Query 1583 CTGCAGAGTTTTATCGCTTCAATGACAACGAAATTAACAAGTATGGATATTTCTGATGAA 1642 |||||||||||||||||||| ||||| ||| |||||| | ||||||||||||||| Sbjct 179 CTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAG 238 Query 1643 ACCAAAAACTACGTTGATACTGCAGGAATTACTGCTACTCACTTACGAATTAAATCGAAG 1702 | ||||| || |||||| |||||||||||| || || |||||||||||||||||| Sbjct 239 TCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAG 298 Query 1703 TGGACTGCTGGTGGAAAATGAAGAAATTCAATCTGAACTTAAAAAATTCGAGAAGCTCTT 1762 ||||||||||| ||||||||| |||||| | || ||| | ||||||||||||| Sbjct 299 TGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTT 358 Query 1763 ACTTCGCCACCTTTCGCCATCACCTGAACG-TACTGGCAAAGACTGACGCTCTCGACGAG 1821 |||| || |||||||||||||| || |||| | ||| |||| |||||||| | || ||| Sbjct 359 ACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAG 417 Query 1822 GAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTACGAAGAACAT 1881 || || | || |||||||| || | || ||||||||||||| | || || |||| Sbjct 418 GAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACAT 477 Query 1882 TTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTATTATC 1937 || || ||||||| | | || | ||||| | ||||| || |||||| || |||| Sbjct 478 TTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC 533 Score = 212 bits (234), Expect = 2e-51 Identities = 180/222 (81%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 2215 CTTATTATGTTCATCCCGTTAACATCCAGACAGCATGTCTTATTATGGAAGGCGCCGAGT 2274 ||||||||||||||||||| ||||| || || || ||||| || ||||||||||| || | Sbjct 1023 CTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAAT 1082 Query 2275 TCACCGAAAATATTATCAATGGTATTGACCAGCCAGTTAAGGCCGCTGAACTATTCGCTT 2334 | || ||||| ||||| ||||| | || | || ||||| ||||||||| | ||||| | Sbjct 1083 TTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGT 1142 Query 2335 TTACCCTGCGTGTACGCGCCGGAAACACTGACCATGTTACACATGCAGAAACTAACGTAC 2394 ||||| ||||||||||||| |||||||||||| | |||| | |||||| ||||| | Sbjct 1143 TTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGC 1202 Query 2395 GTGAACAATTACGTGCTCAAGGAGTAATGTAATGGCTAAAGG 2436 || || |||||||||| ||||||| |||||||| ||||||| Sbjct 1203 GTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGG 1244 >seq27462 Length=653 Score = 167 bits (184), Expect = 8e-38 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 266 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 325 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||||| | || |||| ||||| Sbjct 326 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 385 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192 || ||| || |||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 386 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 445 Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242 || |||||||||||||||||| | || || || ||| ||||||| |||| Sbjct 446 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 495 Score = 123 bits (136), Expect = 9e-25 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 4789 CTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTGCATTCCCCGACCTCA 4848 |||| ||||||||||| ||||| || |||||||||||| ||||||| || || || | Sbjct 42 CTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTA 101 Query 4849 ACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGGTTGACGCTGGCTTCC 4908 | | ||||| |||||||| |||| |||||| |||||||| ||||||||||| || || Sbjct 102 ATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTG 161 Query 4909 AAAACCAAAAAGA 4921 | || |||||||| Sbjct 162 AGAATCAAAAAGA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17421984517215