Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq110700 212 2e-51 seq27462 156 2e-34 seq14883 86.0 2e-13 >seq110700 Length=1315 Score = 212 bits (234), Expect = 2e-51 Identities = 177/214 (83%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 2767 CTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCGCTGAGT 2826 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | Sbjct 1023 CTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAAT 1082 Query 2827 TTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCTTCGCGT 2886 |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1083 TTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGT 1142 Query 2887 ACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAGAATGCT 2945 ||||||||||| || ||| || || || |||| ||| ||||| || | Sbjct 1143 TTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAAAACGTG 1201 Query 2946 CGTCAGAAACTTCGTGCAAGTGGAGTAATGTAAT 2979 ||||| ||| | |||||| ||||| ||||||| Sbjct 1202 CGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 1235 >seq27462 Length=653 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 54 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 113 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 114 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 170 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 171 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 230 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 231 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 290 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 291 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 350 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 351 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 407 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 408 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 451 >seq14883 Length=375 Score = 86.0 bits (94), Expect = 2e-13 Identities = 179/262 (68%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 4115 AAGTTTAAGATCGCTGAAGGTCAGTGGTATCGC-ATGCAGCCTGATCGC--GTTGCATTG 4171 ||||||||||| ||||| |||||||||||||| |||| |||| ||| ||| | Sbjct 365 AAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGTATGTTTCTCCT 309 Query 4172 CCGTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTGATGATATTAAG 4231 | ||| || |||||| || || || ||| | | || |||| |||| | | Sbjct 308 GCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAA 249 Query 4232 CAGCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTATGCAGCTTGCG 4291 | ||||| || || || | || || || ||||||||| | ||| | | Sbjct 248 GAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTG 189 Query 4292 CACTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTAATATGCCGACCACTCGC 4351 || ||||||| ||| ||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 188 CAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGC 129 Query 4352 GACTCTATTATGACCTCTTGAT 4373 || || || ||||| || |||| Sbjct 128 GATTCAATCATGACTTCGTGAT 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19278252480448