Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq110700 399 8e-108 seq27462 167 8e-38 seq85621 80.6 9e-12 >seq110700 Length=1315 Score = 399 bits (442), Expect = 8e-108 Identities = 410/532 (77%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 1414 CCAAG-TGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAG 1472 ||||| |||||||||||| ||| ||||||||| | || |||||||||||||| || | || Sbjct 3 CCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAG 62 Query 1473 AGCTACGATTGAGGCTGGCAAAGCAATCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGA 1532 || | |||||||||||| ||| |||||||||||||||||| |||||||||||||| Sbjct 63 AGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGA 122 Query 1533 CGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTAC 1592 |||| |||||||| ||||| |||||| || || || || || | |||| ||| | Sbjct 123 CGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGC 182 Query 1593 AGAGTTTTATCGCTTCAATGACGCAGAAATTAGCAAATACGGATATTTCTGATGAAACTA 1652 |||||||||||||||| ||||||||||| ||| || | |||||||||||||||| | | Sbjct 183 AGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGA 242 Query 1653 AAAACTACGTTACTAATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGA 1712 |||| || || ||| ||||||||| || |||| |||||| ||||||||||||||| Sbjct 243 AAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGA 302 Query 1713 CTGCTGGTGGAAAATGAAGAACTTCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTT 1772 ||||||| ||||||||| || ||| | || ||| | |||||| |||||||| Sbjct 303 CTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTT 362 Query 1773 CGCAACCTTTCGCCATCATCTCAACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAA 1831 || |||||||||||||| || |||| | | |||| ||||||||| | ||||| || | Sbjct 363 TGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGA 421 Query 1832 AATGGCTCAATATGATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCG 1891 | ||||| |||||| | ||| | | | ||||||||||| | ||||| |||||| | Sbjct 422 AGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTG 481 Query 1892 TACATGGCAAAGAATCAATGCTTGACATTCTAAATGAACGTGGCCTATTATC 1943 | ||||| | ||| || | |||||||| |||| || ||||| || |||| Sbjct 482 TTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC 533 Score = 253 bits (280), Expect = 7e-64 Identities = 189/220 (86%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 2226 CTTATTATGTTCATCCCGTTAACATTCAAACGGCATGTCTTATTATGGAAGGCGCTGAAT 2285 ||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| Sbjct 1023 CTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAAT 1082 Query 2286 TCACCGAAAACATCATTAATGGTGTCGATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGT 2345 | || |||||||| |||||||| ||||| |||||||||||||||||| | ||||||| Sbjct 1083 TTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGT 1142 Query 2346 TTACCTTGCGTGTACGCGCCGGAAACACTGAGCTTATTACTTACGCAGAAAACAATGCGC 2405 ||||||||||||||||||| ||||||||||| || ||||| |||||||| | || | || Sbjct 1143 TTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGC 1202 Query 2406 GTGAAAAACTGCGCGCTCAAGGAGTGATG-GATGTCTAAA 2444 || ||||| | || || ||||||||||| ||||||||| Sbjct 1203 GTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAA 1242 >seq27462 Length=653 Score = 167 bits (184), Expect = 8e-38 Identities = 298/453 (66%), Gaps = 0/453 (0%) Strand=Plus/Plus Query 4784 TGCTGCTGCTAAAGGTAAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAA 4843 ||| |||| |||||| |||||||| |||||||||||| |||| || || || || || Sbjct 43 TGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA 102 Query 4844 CCCGTGGGAACGTGCTGGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCA 4903 | ||||| |||||||| |||| |||||| |||||||| |||||||| || ||||| | Sbjct 103 TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGA 162 Query 4904 AAACCAAAAGGAATTAACTCGCATGCAGCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNN 4963 || ||||| || | ||| ||||| || ||| Sbjct 163 GAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCA 222 Query 4964 NNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAGTCTGTTACTTCTCGGCAAAATACTAA 5023 || ||||| | ||||| || || ||||| || Sbjct 223 AAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAA 282 Query 5024 GGACTCTGTGTATGCTCAAAACGAAATGCTCCAATACAACCAAAAAGAATCTATGTCACG 5083 ||| || ||||| ||||| || ||||| || | || || || |||| | || Sbjct 283 AGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCG 342 Query 5084 CGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAACAACAAACTTCTGAAATTAT 5143 ||||| ||||| | |||||||| | || |||| ||||| || ||| || ||||| Sbjct 343 CGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTAT 402 Query 5144 GCGGCAAATGCTTACTCAGGCTCAAACCTCAGGTCAACACTTTACAAATGACCAAATCCA 5203 ||| |||||||||||||| |||||||| | ||||| | ||||| |||||||||||| | Sbjct 403 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAA 462 Query 5204 AGAACTTACTCGAAAGGTCGGCGCTGATATTGA 5236 |||| | ||||| ||||| | ||||| |||| Sbjct 463 AGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 495 Score = 91.5 bits (100), Expect = 5e-15 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5334 ACCGCCAAGGATGTATCAAATGTCATTAGTGACGCATCTTCTGGTATTGTTGATTATTTT 5393 || || |||||| | || |||||| | | ||| || |||||||| | |||||| |||| Sbjct 551 ACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTT 610 Query 5394 CGTGGCGTTGATAAAGCTGTCGCGGATACTTGGAACAATT 5433 | ||| ||||||||||||| || |||||||||||||||| Sbjct 611 CATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATT 650 >seq85621 Length=123 Score = 80.6 bits (88), Expect = 9e-12 Identities = 87/114 (76%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 2527 GCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAACTTCCGCTGAACGTA 2586 |||||||||||| || || |||||| | |||||||| | |||||| ||| || |||| Sbjct 123 GCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTA 65 Query 2587 TTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTTA 2640 | ||||||||||| || ||||| | ||| |||||| | || || || |||| Sbjct 64 TGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17421984517215