Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsizygus_20marmoreus_20[genbank_20GCA_5F001661215.1_202016-05-11] 10,694 sequences; 59,384,214 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq9961 517 4e-143 >seq9961 Length=5386 Score = 517 bits (572), Expect = 4e-143 Identities = 612/828 (74%), Gaps = 51/828 (6%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 835 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 776 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 775 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 716 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 715 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 656 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 655 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 596 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 595 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 536 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 535 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 476 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGA--TATGAAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || | | | ||| ||| |||| Sbjct 475 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 416 Query 2972 -CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGCTC 2999 || || ||| ||||| |||||||| |||| Sbjct 415 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 356 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 355 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 296 Query 3058 G--AAATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 | ||||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 295 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 239 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 |||||| ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 238 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 181 Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCG 3233 |||||||||||| ||||| ||| | || || ||||| ||| | |||||||| || |||| Sbjct 180 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 121 Query 3234 TCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCA 3293 |||||| | |||||||| |||| || || |||| || || || | || |||||||| Sbjct 120 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 61 Query 3294 TGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGC 3341 |||||||| || ||||||||| |||| ||| |||||||||||||| Sbjct 60 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGC 13 Score = 381 bits (422), Expect = 2e-102 Identities = 677/984 (69%), Gaps = 20/984 (2%) Strand=Plus/Minus Query 3379 GACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTT 3435 |||||||| | || | | || || ||| |||| | ||||| || |||||| | Sbjct 5361 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---ATCCCTAAGCAT 5305 Query 3436 TTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAG 3495 ||| |||| | ||| |||| || || || |||||||| || |||||||||||||| Sbjct 5304 TTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGAC 5245 Query 3496 CGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGC 3555 ||||||||||| ||||| | | |||||| | ||||||||||||||| | ||||||||| Sbjct 5244 CGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGC 5185 Query 3556 TGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAA 3615 ||||| || ||||| |||||| |||||||||| ||||| || || | | || || Sbjct 5184 TGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA 5125 Query 3616 ATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTT 3675 ||| | | | || || ||||| ||||||||| ||||||| |||||||| | | Sbjct 5124 ATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTG 5065 Query 3676 CACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTT 3735 || ||||| || || ||| |||||| ||||||||||||| ||||||||| || ||| Sbjct 5064 CATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTT 5005 Query 3736 GGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTC 3795 || ||| |||||| ||||| || || ||||| || || ||||| |||| | | | || Sbjct 5004 GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTC 4945 Query 3796 TGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGT 3855 ||||| || || || || ||||| || || |||||| | || | || || || |||||| Sbjct 4944 TGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGT 4885 Query 3856 CGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTC 3915 || || || ||||| | |||||| || |||||||| ||||| || ||||||||||| Sbjct 4884 CGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACT 4825 Query 3916 ATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTT 3975 ||| | ||| | || || |||| || ||||||| | ||| || || ||| Sbjct 4824 ATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTT 4765 Query 3976 GCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAAC 4035 | ||| | || || |||||||| ||||||||||||| | | || ||| ||| Sbjct 4764 AACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAAC 4705 Query 4036 TTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAA 4094 ||||| || || || ||| ||| | ||| | |||||| |||| ||| || || Sbjct 4704 TTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAA 4646 Query 4095 GATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTA 4154 | |||| |||| ||| | ||||||||| | ||| || ||| | || Sbjct 4645 GTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTA 4586 Query 4155 TCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAA 4214 ||| | | | || ||||| ||| || | || ||| || |||||| | Sbjct 4585 TCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG---A 4538 Query 4215 TCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCA 4274 | | || ||| | ||| |||| || || || ||||| || |||||||| || Sbjct 4537 TTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCA 4478 Query 4275 GTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTAC 4334 |||| | |||||||| | |||| | | ||| || | ||||||||| || |||| || Sbjct 4477 GTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGAC 4418 Query 4335 TGTACGTGATTCCATTATGACCTC 4358 || ||||| || ||||| || Sbjct 4417 CACTCGCGATTCAATCATGACTTC 4394 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 2111 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2052 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 2051 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1992 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1991 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1932 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1931 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1874 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1873 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1815 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 1814 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1755 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 1754 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1717 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 3220 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 3161 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 3160 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 3106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19360870461816