Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq203529 223 1e-54 seq168545 98.7 4e-17 seq168094 98.7 4e-17 seq61326 98.7 4e-17 seq124466 96.9 1e-16 seq24758 96.9 1e-16 >seq203529 Length=6087 Score = 223 bits (246), Expect = 1e-54 Identities = 262/353 (74%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 3379 GACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTT 3435 |||||||| | || | | || || ||| |||| | ||||| || |||||| | Sbjct 2123 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---ATCCCTAAGCAT 2179 Query 3436 TTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAG 3495 ||| |||| | ||| |||| || || || |||||||| || |||||||||||||| Sbjct 2180 TTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGAC 2239 Query 3496 CGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGC 3555 ||||||||||| ||||| | | |||||| | ||||||||||||||| | ||||||||| Sbjct 2240 CGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGC 2299 Query 3556 TGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAA 3615 ||||| || ||||| |||||| |||||||||| ||||| || || | | || || Sbjct 2300 TGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA 2359 Query 3616 ATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTT 3675 ||| | | | || || ||||| ||||||||| ||||||| |||||||| | | Sbjct 2360 ATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTG 2419 Query 3676 CACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTC 3728 || ||||| || || ||| |||||| ||||||||||||| ||||||||| || Sbjct 2420 CATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTC 2472 Score = 163 bits (180), Expect = 1e-36 Identities = 129/155 (83%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 779 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 838 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 839 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 898 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGC 2714 |||||||||||||| ||||| |||||||||||||| Sbjct 899 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGC 933 Score = 134 bits (148), Expect = 5e-28 Identities = 370/565 (65%), Gaps = 14/565 (2%) Strand=Plus/Plus Query 3795 CTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGG 3854 |||||| || || || || ||||| || || |||||| | || | || || || ||||| Sbjct 2702 CTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGG 2761 Query 3855 TCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGT 3914 ||| || || ||||| | |||||| || |||||||| ||||| || ||||||||||| Sbjct 2762 TCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCAC 2821 Query 3915 CATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCT 3974 ||| | ||| | || || |||| || ||||||| | ||| || || || Sbjct 2822 TATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCT 2881 Query 3975 TGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAA 4034 | | ||| | || || |||||||| ||||||||||||| | | || ||| || Sbjct 2882 TAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAA 2941 Query 4035 CTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTA 4093 |||||| || || || ||| ||| | ||| | |||||| |||| ||| || | Sbjct 2942 CTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGA 3000 Query 4094 AGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGT 4153 || |||| |||| ||| | ||||||||| | ||| || ||| | | Sbjct 3001 AGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTT 3060 Query 4154 ATCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATA 4213 |||| | | | || ||||| ||| || | || ||| || |||||| Sbjct 3061 ATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG--- 3108 Query 4214 ATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGC 4273 || | || ||| | ||| |||| || || || ||||| || |||||||| | Sbjct 3109 ATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTC 3168 Query 4274 AGTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTA 4333 ||||| | |||||||| | |||| | | ||| || | ||||||||| || |||| | Sbjct 3169 AGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGA 3228 Query 4334 CTGTACGTGATTCCATTATGACCTC 4358 | || ||||| || ||||| || Sbjct 3229 CCACTCGCGATTCAATCATGACTTC 3253 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 4714 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 4773 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 4774 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 4828 >seq168545 Length=61 Score = 98.7 bits (108), Expect = 4e-17 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2695 GGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2753 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGCGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq168094 Length=61 Score = 98.7 bits (108), Expect = 4e-17 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2695 GGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2753 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGTGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq61326 Length=87 Score = 98.7 bits (108), Expect = 4e-17 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 2741 TTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCGG 2800 ||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| | Sbjct 1 TTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTG 60 Query 2801 AGTTTAGCGAAAACATTATCAATGGCG 2827 | |||| ||||||||||| ||||||| Sbjct 61 AATTTACGGAAAACATTATTAATGGCG 87 >seq124466 Length=61 Score = 96.9 bits (106), Expect = 1e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2685 GGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGC 2744 ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 GGACTTTGTAGGATACCCTCGCTTTCCTGCCCCTGTTGAGTTTATTGCTGCCGTCATTGC 60 Query 2745 T 2745 | Sbjct 61 T 61 >seq24758 Length=61 Score = 96.9 bits (106), Expect = 1e-16 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2710 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAA 2765 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCCTTGCTTATTATGTTCATCCCGTCAA 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19318650795312