Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq203529 533 5e-148 seq61326 109 2e-20 seq24758 89.7 2e-14 seq124466 87.8 6e-14 seq168545 84.2 8e-13 seq168094 84.2 8e-13 seq193413 78.8 3e-11 >seq203529 Length=6087 Score = 533 bits (590), Expect = 5e-148 Identities = 689/940 (73%), Gaps = 15/940 (2%) Strand=Plus/Plus Query 1262 CTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAAATCAACCTCATACCCAAGAAA 1321 ||||| ||||||||||||||| ||||| |||||||| | || | |||||||| Sbjct 1 CTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAG 60 Query 1322 GTGTTCAGAATACGAATGTCTCGCAATTTCGGAATGAAACTGTTATCAATGGCTCACCTG 1381 |||||||||| ||||| ||||| ||||| |||||| || | ||||| | | ||| Sbjct 61 CTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG 120 Query 1382 TCAGCGGAAACCCTGATGGAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAAC 1441 || |||| | | || |||| ||| | |||||||||||| ||| ||||||||| | Sbjct 121 TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAG 180 Query 1442 ATCTTGAAGCAGAACGCCAAGAAAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCC 1501 || |||||||||||||| || | |||| | | || |||||||| ||| |||| ||| Sbjct 181 ATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCC 240 Query 1502 GACGTTTTGGAGGCGCAACCTGTGACGACGAATCTGCTAAAATTCATGCGCAATTTGACC 1561 |||||||||| |||||||||||||||||| |||||||| ||||| |||||| || || Sbjct 241 GACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATA 300 Query 1562 CGAACAATCGGAGCGTCCAACCTACAGAGTTTTATCGCTTCAATGACCACGAAATTAACA 1621 || || || | |||||||| ||||||||||||||||| ||||| ||| |||||| Sbjct 301 AAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACA 360 Query 1622 AGTACGGATATTTCTGATGAAACCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCT 1681 | |||||||||||||||| | ||||| || ||| | ||||||||| || |||| Sbjct 361 CTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCT 420 Query 1682 AACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACT 1741 ||||||||||||||||||||||||||||| |||||||||| |||||| | || || Sbjct 421 TGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCT 480 Query 1742 TAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCA 1800 | | |||||| ||||||||||| |||||||||||||| || |||| | ||| || Sbjct 481 TGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCA 539 Query 1801 AAAACTGACGCCCTTGACGAGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGAC 1860 ||||||||||| | || |||||||| | | |||||| | || | || |||||||| Sbjct 540 AAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGAC 599 Query 1861 TGGTTCCGGTACGAAGAACATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAA 1920 ||||| | || || |||||| || ||||||| | | || | ||||||| | ||| Sbjct 600 TGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAA 659 Query 1921 GAACGTGGCCTATTATCCACATCGTCAACTGACACAAACCAC--AAAGGAAACTGAAATG 1978 || ||||| || |||| || ||| |||||| | ||| || ||||| Sbjct 660 GAGCGTGGATTACTATCTGAGTCCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT- 714 Query 1979 TCTAAATCAA---AC-GAATCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACT 2034 | | |||| || ||| | ||| || || || ||| | || ||||| || || Sbjct 715 CATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCT 774 Query 2035 TATTCAAGCATCTTCTGTTCTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGA 2094 ||||| || ||| | ||| | || || || || || ||||| || || | || | | Sbjct 775 CATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAA 834 Query 2095 CCGTGTCTGGATTGCTACCGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTAT 2153 | || ||||||||||| ||||| || || ||||| || ||| | ||||||||||| | Sbjct 835 CAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTT 893 Query 2154 ATGGAACACTGGACTTTGTCGGGTATCCTCGCTTTCCTGC 2193 |||| || ||||||||||| || || |||||||||||||| Sbjct 894 ATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGC 933 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 4737 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 4796 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 4797 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 4856 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 4857 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 4916 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 4917 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 4969 Score = 159 bits (176), Expect = 1e-35 Identities = 275/397 (69%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 462 TAATCGAAGAATTGCAAGAATGCTATGACGTGCTCGGACAACTTGATATTAATAACACTA 521 |||| || |||||| | ||||||| | |||||| |||||||||||||||||||||| Sbjct 5692 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 5751 Query 522 TAGACCACAAACCCCTCGGTAATGACCATTGGAACCTCCTCTATGAAAAACCCGTATACA 581 |||||||| ||| || | || | ||| | | || || | || ||| Sbjct 5752 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT-TACG 5810 Query 582 AACATTGGTATCA-GCTCGTTTCAAATCGACCCCTTAAAGATATCCGCGCCGATTACAAC 640 | || | || ||| | | | | || || ||||| ||||| |||| || || || Sbjct 5811 CAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT 5870 Query 641 TATGCAAAGGCTAAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATG 700 || | || || ||| |||| |||||||| |||| | | |||||| || |||||| Sbjct 5871 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATG 5930 Query 701 AAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCT 760 || || || | |||||| | |||| | || |||||||| ||||| || ||| || Sbjct 5931 AAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCT 5990 Query 761 AAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTC 820 | || |||| | |||| || || ||||| || | || || ||||| ||| ||| || Sbjct 5991 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTT 6050 Query 821 TATGATAATCCCAATGCTCTTCGTGACTACTTCCGTG 857 |||||||||||||||||| | |||||||| || |||| Sbjct 6051 TATGATAATCCCAATGCTTTGCGTGACTATTTTCGTG 6087 Score = 154 bits (170), Expect = 5e-34 Identities = 239/335 (71%), Gaps = 10/335 (3%) Strand=Plus/Plus Query 3329 TGGGCATCTGGCTATGACGTAGACGGTACTGACCAATCTTCTCTCGGTCAATTCTCTGGT 3388 ||||||||||||||||| || || || ||||||||| | || | || || || |||||| Sbjct 2703 TGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGT 2762 Query 3389 CGCGTTCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTATGTTCCTGAGCATCGCGTA 3448 || ||||| ||||||| || || || || || |||| ||||||||||||| || Sbjct 2763 CGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACT 2822 Query 3449 ATTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATGAAATGGAAATGCACTATC 3506 || | ||||| ||| || ||| |||||||||||| | ||| || || || || | Sbjct 2823 ATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACC 2880 Query 3507 TTGTAGGTAAAGAAAACTTAACTTATACCGATATTGCTTGTGACCCTGCACTG-ATGGCT 3565 || | ||||| || |||||||||||||||||| | ||||||| || ||||| Sbjct 2881 TTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC- 2939 Query 3566 AACCTGCCACCTCGTGAAGTATCCTTAAAAGAATTCTTCC--ACTCCTCACCCGATTCTG 3623 ||| |||| || |||||| | || | || || | |||| || | | || ||| Sbjct 2940 AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCG--TCTA 2997 Query 3624 CTAAATTCAAAATCGCTGAGGGCCAATGGTATCGT 3658 || || || || |||||||| || ||||||||| Sbjct 2998 AGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGT 3032 Score = 154 bits (170), Expect = 5e-34 Identities = 325/482 (67%), Gaps = 17/482 (4%) Strand=Plus/Plus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 4190 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 4249 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 4250 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 4309 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4310 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 4369 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT-CTGCTATCTCTGGCATCCTTGCCGACTCTG 4801 ||| |||||| || | || || | ||||| | | | ||||| | || | ||| Sbjct 4370 TGTTCCTAACCCTGATGAGGCCG-TCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTG 4428 Query 4802 G-CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCA 4849 | ||| | | || | | || || ||| | | | |||| | Sbjct 4429 GTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGC 4488 Query 4850 TGGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACT 4906 | || || || ||| | ||||||||| |||| || || ||||| || || | Sbjct 4489 TTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATT 4548 Query 4907 ATCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTA 4966 |||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 4549 ATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT 4608 Query 4967 GTCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTG 5026 | | || ||| ||||| || || | ||||| || ||||| || || ||||| || | Sbjct 4609 CTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGG 4668 Query 5027 AC 5028 || Sbjct 4669 AC 4670 Score = 102 bits (112), Expect = 3e-18 Identities = 233/349 (67%), Gaps = 14/349 (4%) Strand=Plus/Plus Query 2917 TGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTGCCTAAATTCTTACATCA 2976 ||| |||| ||| || || ||| || |||| |||| | ||||| || ||| Sbjct 2128 TGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCA 2187 Query 2977 GGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTTGGTCTGATGACTTAACTTA 3036 ||| ||| ||||||| ||||| ||||| || ||| |||| ||| ||| || | | || Sbjct 2188 GGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGG----ATGCCTGACCGTA 2243 Query 3037 C----GCTAACCCATCCAATATGCCTTCTGAGGATTATAAATGG---GGCGTACGTGTCG 3089 | |||||||| ||| || | | | ||| || | || | ||| | Sbjct 2244 CCGAGGCTAACCCT---AATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCT 2300 Query 3090 CTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGATACTCGTACATCTGAAAACA 3149 | || ||| || |||||||| || ||||| || || ||| ||| | | Sbjct 2301 GCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAA 2360 Query 3150 TGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAAGCCGCATACGCTAAATTAC 3209 |||| ||| ||| | |||||||||||||||| || ||||| || || ||||| || | Sbjct 2361 TGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC 2420 Query 3210 ATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGTGACATTAT 3258 |||| || || |||||||||||||||||| ||||||| ||| |||| Sbjct 2421 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 2469 >seq61326 Length=87 Score = 109 bits (120), Expect = 2e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 2220 TTGCTTATTACGTTCATCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTG 2279 |||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| |||| Sbjct 1 TTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTG 60 Query 2280 AGTTTACCGAAAACATCGTCAATGG 2304 | ||||| |||||||| | ||||| Sbjct 61 AATTTACGGAAAACATTATTAATGG 85 >seq24758 Length=61 Score = 89.7 bits (98), Expect = 2e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2189 CCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACAT 2247 ||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||| Sbjct 1 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCCTTGCTTATTATGTTCATCCCGTCAACAT 59 >seq124466 Length=61 Score = 87.8 bits (96), Expect = 6e-14 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2164 GGACTTTGTCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGC 2223 ||||||||| || || |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1 GGACTTTGTAGGATACCCTCGCTTTCCTGCCCCTGTTGAGTTTATTGCTGCCGTCATTGC 60 Query 2224 T 2224 | Sbjct 61 T 61 >seq168545 Length=61 Score = 84.2 bits (92), Expect = 8e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2174 GGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGT 2232 || || |||||||||||||||||||||| ||||||| ||||||||||||||||||| || Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGCGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq168094 Length=61 Score = 84.2 bits (92), Expect = 8e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2174 GGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGT 2232 || || |||||||||||||||||||||| ||||||| ||||||||||||||||||| || Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGTGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq193413 Length=61 Score = 78.8 bits (86), Expect = 3e-11 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 1190 TATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAACAAAAAATCAGATAT 1242 ||||||||||| || ||||| ||||||||||||||||||||||| |||||||| Sbjct 54 TATATGGCTGTTGGTTTCTATGTTGCTAAATACGTTAACAAAAAGTCAGATAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17694731583240