Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq203529 223 1e-54 seq61326 113 2e-21 seq24758 105 3e-19 seq168545 93.3 2e-15 seq168094 93.3 2e-15 seq124466 93.3 2e-15 seq99437 86.0 2e-13 >seq203529 Length=6087 Score = 223 bits (246), Expect = 1e-54 Identities = 259/347 (75%), Gaps = 2/347 (1%) Strand=Plus/Plus Query 3379 ATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATC 3438 |||| | || | |||| || ||| ||| | | ||| || |||||| |||| || Sbjct 2127 ATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTC 2186 Query 3439 AGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTG 3498 || |||| ||||||| ||||| |||||||| ||||||||||||||||| ||||| | Sbjct 2187 AGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCG 2246 Query 3499 AAGCTAATCCT-TCAAACTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTTGCCAT 3557 | ||||| ||| | |||| ||| |||||| |||||||||| |||||||| |||||| Sbjct 2247 AGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCAT 2305 Query 3558 CTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGC 3617 || |||| |||||| ||||||| |||||||| || ||| |||| || |||||| Sbjct 2306 CTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG 2365 Query 3618 ATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCACACT 3677 | | | || || ||||| ||||||||| |||| || |||||||| | | || ||| Sbjct 2366 ACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT 2425 Query 3678 GAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTC 3724 || || || ||| ||| || ||||||||||||| ||||||||| || Sbjct 2426 GACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTC 2472 Score = 192 bits (212), Expect = 2e-45 Identities = 383/564 (68%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 3792 TGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGG 3851 ||||| || || || || ||||| || || |||||| | || | || |||||||| || Sbjct 2703 TGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGT 2762 Query 3852 CGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTC 3911 || ||||||||||| | |||||| || |||||||| ||||| || ||||||||||| Sbjct 2763 CGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACT 2822 Query 3912 ATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTT 3971 ||| | ||| | ||| ||||| || ||||||| || ||| ||| || ||| Sbjct 2823 ATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTT 2882 Query 3972 GTTGGTCGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAAT 4031 | | | ||||||||||||||| ||||||| ||||| | |||| ||| || Sbjct 2883 AACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAAC 2942 Query 4032 TTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAG 4091 |||||||||||||| |||||| |||| |||||||| |||| || | ||| Sbjct 2943 TTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAG 3002 Query 4092 ATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTA 4150 ||||| |||| ||| | ||||||||| | || |||||| || | || Sbjct 3003 TTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTA 3061 Query 4151 TCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGA 4210 ||| | ||||| || ||||| ||| || | || ||| || ||||||| Sbjct 3062 TCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTT 3112 Query 4211 CCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCA 4270 | |||| || | || ||| ||| |||| ||| | ||||||||||| || Sbjct 3113 GC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCA 3169 Query 4271 GTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCCATATTCCTAC 4330 |||| | |||||||||| ||||| | | |||||| | ||||||||| || | || || Sbjct 3170 GTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGAC 3229 Query 4331 TGTTCGTGATTCTATTATGACCTC 4354 ||| ||||| || ||||| || Sbjct 3230 CACTCGCGATTCAATCATGACTTC 3253 Score = 149 bits (164), Expect = 2e-32 Identities = 126/155 (81%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 779 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 838 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 839 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 898 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGC 2713 |||||||||||||| || || |||||||||||||| Sbjct 899 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGC 933 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Plus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 4334 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 4391 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 4392 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 4448 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 4449 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 4495 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 4496 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 4551 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 4552 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 4611 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 4612 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 4668 >seq61326 Length=87 Score = 113 bits (124), Expect = 2e-21 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 2740 TTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCGG 2799 ||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| | Sbjct 1 TTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTG 60 Query 2800 AGTTTAGCGAAAACATTATTAATGGCG 2826 | |||| ||||||||||||||||||| Sbjct 61 AATTTACGGAAAACATTATTAATGGCG 87 >seq24758 Length=61 Score = 105 bits (116), Expect = 3e-19 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2709 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATT 2768 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCCTTGCTTATTATGTTCATCCCGTCAACATT 60 Query 2769 C 2769 | Sbjct 61 C 61 >seq168545 Length=61 Score = 93.3 bits (102), Expect = 2e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2694 GGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2752 || || |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGCGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq168094 Length=61 Score = 93.3 bits (102), Expect = 2e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2694 GGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2752 || || |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGTGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq124466 Length=61 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2684 GGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGC 2743 ||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 GGACTTTGTAGGATACCCTCGCTTTCCTGCCCCTGTTGAGTTTATTGCTGCCGTCATTGC 60 Query 2744 T 2744 | Sbjct 61 T 61 >seq99437 Length=47 Score = 86.0 bits (94), Expect = 2e-13 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 2723 GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 2769 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47 GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19325036070736