Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq203529 233 7e-58 seq61326 140 1e-29 seq24758 105 3e-19 seq168545 102 3e-18 seq168094 102 3e-18 seq124466 102 3e-18 seq109755 86.0 2e-13 seq99437 86.0 2e-13 seq111514 84.2 8e-13 seq111513 84.2 8e-13 >seq203529 Length=6087 Score = 233 bits (258), Expect = 7e-58 Identities = 395/563 (70%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 3817 CTGGGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTCAGTTCTCCGG 3876 |||||| || |||||||||||||| || || ||||||| || | || ||||| || || Sbjct 2702 CTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGG 2761 Query 3877 TCGTGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTGAGCATGGCAC 3936 |||||| || ||||| | ||| ||||| || ||||| ||||| |||||||||||||| Sbjct 2762 TCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCAC 2821 Query 3937 TATGTTCACACTCGCATTGGTCCGCTTCCCGCCGACT--CATGAAATGGAGATGCATTAC 3994 |||||| || || || | || || || ||||| ||| | ||| ||||| || ||| Sbjct 2822 TATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTAC 2879 Query 3995 TTAGTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGCTTTG-ATGGC 4053 | | ||||| | |||||||||||| ||| | ||| | ||||||| |||| ||||| Sbjct 2880 CTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC 2939 Query 4054 TAACTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGTGC 4113 |||||||| || ||||| || |||| | | |||| |||||| | | | Sbjct 2940 -AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAA 2998 Query 4114 TAAGTTTAAGATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGATCG--CGTTGCATT 4170 ||||||||||| ||||| |||||||||||||| |||| |||| ||| ||| | Sbjct 2999 GAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGTATGTTTCTCC 3055 Query 4171 GCCGTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTGATGATATTAA 4230 | ||| || |||||| || || || ||| | | || |||| |||| | | Sbjct 3056 TGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCA 3115 Query 4231 GCAGCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTATGCAGCTTGC 4290 | ||||| || || || | || || || ||||||||| | ||| | Sbjct 3116 AGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTT 3175 Query 4291 GCACTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTAATATGCCGACCACTCG 4350 ||| ||||||| ||| ||| |||||| ||| ||||||| ||| ||||||||||||| Sbjct 3176 GCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCG 3235 Query 4351 CGACTCTATTATGACCTCTTGAT 4373 ||| || || ||||| || |||| Sbjct 3236 CGATTCAATCATGACTTCGTGAT 3258 Score = 179 bits (198), Expect = 1e-41 Identities = 134/157 (85%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 777 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 836 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 837 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 896 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGC 2737 | || ||||||||||| |||||||||||||||||||| Sbjct 897 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGC 933 Score = 156 bits (172), Expect = 2e-34 Identities = 217/302 (72%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 3449 CCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTACAATAATTACTTTAAAGCTCCGT 3506 |||||| ||| || ||| ||||| |||| || || || || || |||||||| |||| Sbjct 2171 CCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT 2228 Query 3507 GGATGGATGACCTGACTTATGCCAACCCGTCTAATATGGAGGGTGAAGATGTTCGTTTTG 3566 ||||| ||||| || | || ||||| | | | | || |||| ||||| || Sbjct 2229 GGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATG 2288 Query 3567 GTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAA 3626 || | ||| || | | |||| ||||||||||||||||||||||| || ||||| Sbjct 2289 GTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGC 2348 Query 3627 CCTCTCATTCTATGGAGACTGAAACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTT 3686 |||| ||| |||| |||| || ||||||||||||||| |||| || |||| Sbjct 2349 TTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTT 2408 Query 3687 ATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTG 3746 ||||| | || |||||||| || || ||||||||||||||| ||||| | |||| || Sbjct 2409 ATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTA 2468 Query 3747 TT 3748 || Sbjct 2469 TT 2470 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 4528 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 4587 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 4588 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 4644 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 4645 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 4704 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 4705 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 4764 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 4765 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 4824 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 4825 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 4881 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 4882 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 4925 Score = 98.7 bits (108), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 3013 AAAGGCGCTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCC 3072 |||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 1454 AAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCC 1513 Query 3073 CT---ATAAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGA 3129 || | ||||| | ||||| || | |||||| ||| || ||||| || || || Sbjct 1514 CTTACTTGAGGATAAAT-TATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGA 1572 Query 3130 CCTTTCTCATCT 3141 |||||| ||||| Sbjct 1573 CCTTTCCCATCT 1584 >seq61326 Length=87 Score = 140 bits (154), Expect = 1e-29 Identities = 83/87 (95%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 2764 TTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCGCTG 2823 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1 TTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTG 60 Query 2824 AGTTTACGGAAAACATTGTTAATGGCG 2850 | ||||||||||||||| ||||||||| Sbjct 61 AATTTACGGAAAACATTATTAATGGCG 87 >seq24758 Length=61 Score = 105 bits (116), Expect = 3e-19 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2733 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATT 2792 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCCTTGCTTATTATGTTCATCCCGTCAACATT 60 Query 2793 C 2793 | Sbjct 61 C 61 >seq168545 Length=61 Score = 102 bits (112), Expect = 3e-18 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2718 GGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2776 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGCGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq168094 Length=61 Score = 102 bits (112), Expect = 3e-18 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2718 GGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2776 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGTGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq124466 Length=61 Score = 102 bits (112), Expect = 3e-18 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2708 GGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGC 2767 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 GGACTTTGTAGGATACCCTCGCTTTCCTGCCCCTGTTGAGTTTATTGCTGCCGTCATTGC 60 Query 2768 T 2768 | Sbjct 61 T 61 >seq109755 Length=61 Score = 86.0 bits (94), Expect = 2e-13 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGA 2875 |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 61 CTGAATTTACGGAAAACATTATTAATGGCGGCGAGCGTCCGGTTAAAGCCGCTGA 7 >seq99437 Length=47 Score = 86.0 bits (94), Expect = 2e-13 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 2747 GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 2793 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47 GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 1 >seq111514 Length=61 Score = 84.2 bits (92), Expect = 8e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2826 TTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCTTCGC 2884 ||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||| Sbjct 3 TTTACGGAAAACATTATTAATGGCGTCGGGCGTCCGGTTAAAGCCGCTGAATTGTTCGC 61 >seq111513 Length=51 Score = 84.2 bits (92), Expect = 8e-13 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 2826 TTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTG 2874 ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3 TTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTG 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19257990678784