Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq203529 217 6e-53 seq61326 113 2e-21 seq24758 105 3e-19 seq168545 93.3 2e-15 seq168094 93.3 2e-15 seq124466 93.3 2e-15 seq99437 86.0 2e-13 >seq203529 Length=6087 Score = 217 bits (240), Expect = 6e-53 Identities = 235/309 (76%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 3423 ATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCG 3482 || |||||| |||| |||| |||| ||||||| ||||| |||||||| |||||| Sbjct 2168 ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCG 2227 Query 3483 TGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCG 3538 ||||||||||| ||||| || ||||| ||| ||| ||| | | |||||| |||| Sbjct 2228 TGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCG 2283 Query 3539 CTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAAC 3598 ||||| ||||||||||||||||| |||| |||||| ||||||| |||||||| || || Sbjct 2284 TTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC 2343 Query 3599 TAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGC 3658 | |||| || |||||| | | | || || ||||| ||||||||| |||| || Sbjct 2344 TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGC 2403 Query 3659 CGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGA 3718 |||||||| | | |||||||| || || ||| ||| |||||||||||||| | ||| Sbjct 2404 TGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA 2463 Query 3719 TGTTATCTC 3727 |||||| || Sbjct 2464 TGTTATTTC 2472 Score = 185 bits (204), Expect = 3e-43 Identities = 385/570 (68%), Gaps = 14/570 (2%) Strand=Plus/Plus Query 3794 CTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGG 3853 |||||| || || || || ||||| || || |||||| | || | || |||||||| || Sbjct 2702 CTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGG 2761 Query 3854 TCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGT 3913 ||| || |||||||| | |||||| || ||||| || ||||| || || |||||||| Sbjct 2762 TCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCAC 2821 Query 3914 CATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCT 3973 ||| | ||| | ||| ||||| || ||||||| || ||| ||| || || Sbjct 2822 TATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCT 2881 Query 3974 TGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAA 4033 | | | | ||||||||||||||| |||| || ||||| | |||| ||| || Sbjct 2882 TAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAA 2941 Query 4034 TTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAA 4093 |||||||| ||||| |||||| ||||| |||||||| |||| | || | || Sbjct 2942 CTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAA 3001 Query 4094 GATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGT 4152 | ||||| |||| ||| | ||||||||| | || |||||| || | | Sbjct 3002 GTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTT 3060 Query 4153 ATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATG 4212 |||| | |||||||| || || ||| || | || ||| || ||||||| Sbjct 3061 ATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATT 3111 Query 4213 ACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGC 4272 | |||| || | || ||| ||| |||| ||| | ||||||||||| | Sbjct 3112 TGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTC 3168 Query 4273 AGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTTATCGTCATATTCCTA 4332 ||||| | |||||||||| ||||| | | |||||| | |||||||| || | || | Sbjct 3169 AGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGA 3228 Query 4333 CTGTTCGTGATTCTATTATGACCTCTTGAT 4362 | ||| ||||| || ||||| || |||| Sbjct 3229 CCACTCGCGATTCAATCATGACTTCGTGAT 3258 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Plus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 4529 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 4588 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 4589 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 4643 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 4644 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 4702 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 4703 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 4761 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 4762 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 4821 Query 5762 CGTCCAT 5768 |||| || Sbjct 4822 CGTCTAT 4828 Score = 140 bits (154), Expect = 1e-29 Identities = 125/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 777 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 836 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 837 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 896 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGC 2713 | ||||||||||||| || || |||||||||||||| Sbjct 897 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGC 933 >seq61326 Length=87 Score = 113 bits (124), Expect = 2e-21 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 2740 TTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCGG 2799 ||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| | Sbjct 1 TTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTG 60 Query 2800 AGTTTAGCGAAAACATTATTAATGGCG 2826 | |||| ||||||||||||||||||| Sbjct 61 AATTTACGGAAAACATTATTAATGGCG 87 >seq24758 Length=61 Score = 105 bits (116), Expect = 3e-19 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2709 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATT 2768 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCCTTGCTTATTATGTTCATCCCGTCAACATT 60 Query 2769 C 2769 | Sbjct 61 C 61 >seq168545 Length=61 Score = 93.3 bits (102), Expect = 2e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2694 GGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2752 || || |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGCGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq168094 Length=61 Score = 93.3 bits (102), Expect = 2e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2694 GGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2752 || || |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 GGATACCCTCGCTTTCCTGCTCCTGTTGTGTTTATTGCTGCCGTCATTGCTTATTATGT 61 >seq124466 Length=61 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2684 GGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGC 2743 ||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 GGACTTTGTAGGATACCCTCGCTTTCCTGCCCCTGTTGAGTTTATTGCTGCCGTCATTGC 60 Query 2744 T 2744 | Sbjct 61 T 61 >seq99437 Length=47 Score = 86.0 bits (94), Expect = 2e-13 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 2723 GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 2769 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47 GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19340999259296