Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq831 628 1e-176 >seq831 Length=5385 Score = 628 bits (696), Expect = 1e-176 Identities = 1120/1630 (69%), Gaps = 71/1630 (4%) Strand=Plus/Minus Query 2779 TGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCG 2838 || ||| | ||||||||||| || |||| ||||||||||| |||||||||||||| ||| Sbjct 5384 TGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCG 5325 Query 2839 GTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACT 2898 ||||| |||||||| | ||||||| ||| ||||| | |||||| || || | Sbjct 5324 GTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTT 5265 Query 2899 GTAATGGATGCCGAGGAAAATGCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGATAT 2958 | | || || || ||||| | ||||| |||||||| ||| | ||| ||| || || | Sbjct 5264 CTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGT 5205 Query 2959 G--AAG--AAAGCACGT-----CGTTCTCC-TAGTCGTC--------------------- 2987 ||| ||| |||| || || || | |||||| Sbjct 5204 CTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTA 5145 Query 2988 ---------GTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGG 3038 ||||||| ||||| || ||||||||||| ||| || |||||||| || Sbjct 5144 AAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGG 5085 Query 3039 CCCTTCGGGGCCTT--TTAAGGA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAAC 3094 |||||| |||| || |||| |||| ||||||||| | |||||| ||| || | Sbjct 5084 GGCTTCGGCCCCTTACTTGAGGATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGC 5028 Query 3095 GTGAAATTGTTGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAA 3152 || |||||| || ||||||| ||| | ||| | || | |||||||||| | Sbjct 5027 GTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTAT 4970 Query 3153 GACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGC 3212 || ||||| ||||| |||||||||||||| ||||| ||| | || || ||||| || Sbjct 4969 TACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGC 4910 Query 3213 TTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCAC 3272 | | |||||||| || |||||||||| | |||||||| |||| || || |||| || Sbjct 4909 TCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTAC 4850 Query 3273 CTTCTACATTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGG 3332 || || | || |||||||| |||||||| || ||||||||| |||| ||| ||||| Sbjct 4849 TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGG 4790 Query 3333 TGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTA 3392 ||||||||| ||||| || |||||| | | | ||| |||||||| | || Sbjct 4789 TGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTT 4730 Query 3393 TGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTA 3449 | | || || ||| |||| | ||||| || |||||| |||| |||| | || Sbjct 4729 TCTTGGCACGATTAACCCTGATACCAATAAA---ATCCCTAAGCATTTGTTTCAGGGTTA 4673 Query 3450 TCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAA 3509 | |||| || || || |||||||| || |||||||||||||| ||||||||||| || Sbjct 4672 TTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAA 4613 Query 3510 CCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAA 3569 ||| | | |||||| | ||||||||||||||| | |||||||||||||| || ||||| Sbjct 4612 CCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAA 4553 Query 3570 TATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAG 3629 |||||| |||||||||| ||||| || || | | || ||||| | | | Sbjct 4552 CATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTAC 4493 Query 3630 CAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGA 3689 || || ||||| ||||||||| ||||||| |||||||| | | || ||||| || || Sbjct 4492 CACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA 4433 Query 3690 GCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTC 3749 ||| |||||| ||||||||||||| ||||||||| || ||||| ||| |||||| Sbjct 4432 ACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTC 4373 Query 3750 CTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTA 3809 ||||| || || ||||| || || ||||| |||| | | | ||||||| || || || Sbjct 4372 TTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTA 4313 Query 3810 CGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGAC 3869 || ||||| || || |||||| | || | || || || |||||||| || || ||||| Sbjct 4312 TGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGAC 4253 Query 3870 GTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGGC 3929 | |||||| || |||||||| ||||| || ||||||||||| ||| | ||| | || Sbjct 4252 CTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGC 4193 Query 3930 TCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTGCTGGTAAGTCTCA 3989 || |||| || ||||||| | ||| || || ||| | ||| | Sbjct 4192 GCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC 4133 Query 3990 GTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACTTGCCTCCTCGCGA 4049 || || |||||||| ||||||||||||| | | || ||| |||||||| || || || Sbjct 4132 TTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA 4073 Query 4050 GATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAGATTAAAGTTGCCG 4108 ||| ||| | ||| | |||||| |||| ||| || ||| |||| |||| | Sbjct 4072 AATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTG 4014 Query 4109 AGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTATCATGATTTGCATG 4168 || | ||||||||| | ||| || ||| | ||||| | | | | Sbjct 4013 AGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAG 3954 Query 4169 GATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAATCTTCAGGAAGCTA 4228 | ||||| ||| || | || ||| || |||||| || | || ||| Sbjct 3953 GCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG---ATTTGCAAGAACGCG 3906 Query 4229 TCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCAGTTGCTACAGTGGA 4288 | ||| |||| || || || ||||| || |||||||| |||||| | ||||||| Sbjct 3905 TACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA 3846 Query 4289 ACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTACTGTACGTGATTCCA 4348 | | |||| | | ||| || | ||||||||| || |||| || || ||||| | Sbjct 3845 ATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAA 3786 Query 4349 TTATGACCTC 4358 | ||||| || Sbjct 3785 TCATGACTTC 3776 Score = 257 bits (284), Expect = 6e-65 Identities = 186/215 (87%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 217 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 158 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 157 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 98 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 97 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 38 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAAC 2774 |||||||||||||||||||||||||| | ||||| Sbjct 37 ATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 3 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 1493 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1434 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 1433 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1374 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1373 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1314 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1313 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1256 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1255 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1197 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 1196 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1137 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 1136 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1099 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 2602 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 2543 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 2542 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 2488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362013882980