Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq831 686 0.0 >seq831 Length=5385 Score = 686 bits (760), Expect = 0.0 Identities = 1138/1631 (70%), Gaps = 74/1631 (5%) Strand=Plus/Minus Query 2801 CTGCCTCATCATGGAAGGCGCTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCC 2860 ||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 5385 CTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCC 5326 Query 2861 GGTTAAAGCCGCTGAGCTCTTCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAAC 2920 ||||||||||||||| | ||||||| ||||||||||| || ||| || || Sbjct 5325 GGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGT 5266 Query 2921 GGTT-CTGAGCGCTGAAGAGAATGCTCGTCAGAAACTTCGTGCAAGTGGAGTAATGTAAT 2979 || |||| ||| ||||| || | ||||| ||| | |||||| ||||| ||||||| Sbjct 5265 TCTTACTGA-CGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 5207 Query 2980 ATG--------AAGAAAGCTC-GTCGTTC-CCCTTCTCGT-------------------- 3009 | || || | || | || || |||| |||| Sbjct 5206 GTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTAC 5147 Query 3010 -------AAG---AAAGGCGCTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAAC 3059 ||| |||||||||||||| ||||||||||| ||| ||||||||||| Sbjct 5146 TAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCA 5087 Query 3060 GGGGCTTCGGCCCCTA---TAAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAAC 3116 ||||||||||||||| | ||||| | | |||| || | |||||| ||| || | Sbjct 5086 GGGGCTTCGGCCCCTTACTTGAGGATAAATTA-TGTCTAATATTCAAACTGGCGCCGAGC 5028 Query 3117 GTATTCCTCACGACCTTTCTCATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTAAAGG 3176 |||| || || |||||||| ||||| | || ||| || | ||||||||| | | Sbjct 5027 GTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTA 4968 Query 3177 TTGTTTCTTGGACTCCTGTTGTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTA 3236 |||| ||||| ||| | || || || || || ||| | || |||||||| Sbjct 4967 CCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTC 4908 Query 3237 TTCGCCTTTCCCCGCTTCGTCGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGT 3296 | || ||||| || | ||||||||||||||| |||||||| ||| ||| | || || | Sbjct 4907 TCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTT 4848 Query 3297 TTTATGTCCCTCATCGTCATGTATATGGTGAGCAGTGGATTGATTTTATGAAGCAAGGTG 3356 ||||||||||||||||||| || |||||||| ||||||||| | || |||||| | |||| Sbjct 4847 TTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTG 4788 Query 3357 TTGATGCTGCTCCTTTGGCCCCTGTTCAGTGCTCTCGCGGTTGGGATAGTGCTCAG---- 3412 || |||| ||||| | | ||||| | | || |||| ||| || || Sbjct 4787 TTAATGCCACTCCTCTCCCGACTGTTAA---CACTACTGGTT---ATATTGACCATGCCG 4734 Query 3413 --TATCTTGCTACTATTCCGTCTAGTAACTTAAAGGTTCCTAAG--TTTCTTCATCAAGG 3468 | ||||| || ||| || || | || | |||||| ||| || ||| || Sbjct 4733 CTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTT--TCAGGG 4676 Query 3469 TTACCTGAACATTTACAATAATTACTTTAAAGCTCCGTGGATGGATGACCTGACTTATGC 3528 ||| |||| || || || || || |||||||| ||||||||| ||||| || | || Sbjct 4675 TTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGC 4616 Query 3529 CAACCCGTCTAATATGGAGGGTGAAGATGTTCGTTTTGGTGTTCGTGCATGTAACTTGAA 3588 ||||| | | | | || |||| ||||| |||| | ||| || | | || Sbjct 4615 TAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAA 4556 Query 3589 AACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAACCTCTCATTCTATGGAGACTGA 3648 || ||||||||||||||||||||||| || ||||| |||| ||| |||| Sbjct 4555 AAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTC 4496 Query 3649 AACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTTATGCTCAATTACATACTGAGCA 3708 |||| || ||||||||||||||| |||| || ||||||||| | || |||||||| || Sbjct 4495 TACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCA 4436 Query 3709 GGAGCGTGATTACTTCATGACTCGTTATCGTGATATTGTTAACGAATTTGGAGGTAGTAC 3768 || ||||||||||||||| ||||| | |||| || || ||||||||||| || Sbjct 4435 AGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAAC 4376 Query 3769 TTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGCATTCTGAGTTCTGGGCCTCAGG 3828 |||||||| || || || |||||||| ||||| |||| ||| | ||||||| || || Sbjct 4375 CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGG 4316 Query 3829 CTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTCAGTTCTCCGGTCGTGTCCAGCA 3888 |||||||||||| || || ||||||| || | || ||||| || |||||||| || || Sbjct 4315 CTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACA 4256 Query 3889 GACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTGAGCATGGCACTATGTTCACACT 3948 ||| | ||| ||||| || ||||| ||||| |||||||||||||||||||| || || Sbjct 4255 GACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCT 4196 Query 3949 CGCATTGGTCCGCTTCCCGCCGACTC--ATGAAATGGAGATGCATTACTTAGTTGGTAAA 4006 || | || || || ||||| ||| | ||| ||||| || ||| | | |||| Sbjct 4195 TGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAA 4138 Query 4007 GAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGCTTTG-ATGGCTAACTTGCCTCC 4065 | | |||||||||||| ||| | ||| | ||||||| |||| ||||| |||||||| || Sbjct 4137 GGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCC 4079 Query 4066 TCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGTGCTAAGTTTAAGAT 4125 ||||| || |||| | | |||| |||||| | | | ||||||||||| Sbjct 4078 GCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGAT 4019 Query 4126 CGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGATCG--CGTTGCATTGCCGTATAACTA 4182 ||||| |||||||||||||| |||| |||| ||| ||| | | ||| || Sbjct 4018 TGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGTATGTTTCTCCTGCTTATCACCT 3962 Query 4183 TCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTGATGATATTAAGCAGCGCGTTCT 4242 |||||| || || || ||| | | || |||| |||| | | | ||||| || Sbjct 3961 TCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACT 3902 Query 4243 GGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTATGCAGCTTGCGCACTGGAATAT 4302 || || | || || || ||||||||| | ||| | ||| ||||||| Sbjct 3901 TATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAG 3842 Query 4303 GCAGACTAAGTTTAATTGCACCATTTATCGTAATATGCCGACCACTCGCGACTCTATTAT 4362 ||| ||| |||||| ||| ||||||| ||| |||||||||||||||| || || || Sbjct 3841 TCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCAT 3782 Query 4363 GACCTCTTGAT 4373 ||| || |||| Sbjct 3781 GACTTCGTGAT 3771 Score = 288 bits (318), Expect = 4e-74 Identities = 195/219 (89%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 219 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 160 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 159 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 100 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 99 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 40 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGG 2799 |||||||||||||||||||||||||||||||||| |||| Sbjct 39 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGG 1 Score = 165 bits (182), Expect = 3e-37 Identities = 278/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352 || |||||| |||| ||||| || | || | ||||| || || || |||| ||| || Sbjct 1493 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1434 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 1433 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1374 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 1373 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1314 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||||| |||| Sbjct 1313 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1256 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1255 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1197 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 1196 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1137 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 1136 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1099 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Minus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 2788 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 2729 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 2728 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 2672 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 2671 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 2612 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 2611 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 2552 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 2551 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 2492 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 2491 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 2435 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 2434 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 2391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19301217607360