Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq1675 746 0.0 >seq1675 Length=5468 Score = 746 bits (826), Expect = 0.0 Identities = 1193/1708 (70%), Gaps = 71/1708 (4%) Strand=Plus/Plus Query 2701 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 2760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 61 Query 2761 GTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATC 2820 ||||| | ||||| || || ||| | ||||||||||| || |||| ||||||||||| Sbjct 62 GTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATT 121 Query 2821 AATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAA 2880 |||||||||||||| |||||||| |||||||| | ||||||| ||| ||||| | Sbjct 122 AATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGC 181 Query 2881 GCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAATGCTCGTCAGAAATTACGCGCA 2940 |||||| || || | | | || || || ||||| | ||||| |||||||| ||| Sbjct 182 GCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCA 241 Query 2941 AATGGACTGAAGTGATATG--AAG--AAAGCACGT-----CGTTCTCC-TAGTCGTC--- 2987 | ||| ||| || || | ||| ||| |||| || || || | |||||| Sbjct 242 GAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGC 301 Query 2988 ---------------------------GTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTT 3020 ||||||| ||||| || ||||||||||| ||| Sbjct 302 AGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTC 361 Query 3021 CTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAGGA--AATTCAAATGTCTAATG 3076 || |||||||| || |||||| |||| || |||| |||| ||||||||| Sbjct 362 AACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATT---ATGTCTAATA 418 Query 3077 TACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTCATCTTGCCTT--TGACTGTGG 3134 | |||||| ||| || ||| |||||| || ||||||| ||| | ||| | Sbjct 419 TTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG-GT 477 Query 3135 CATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGA 3194 || | |||||||||| | || ||||| ||||| |||||||||||||| ||||| || Sbjct 478 CA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGA 536 Query 3195 GCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTC 3254 | | || || ||||| ||| | |||||||| || |||||||||| | |||||||| || Sbjct 537 GATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTC 596 Query 3255 TAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCATGTTTATGGCGACCAGTGGAT 3314 || || || |||| || || || | || |||||||| |||||||| || |||||||| Sbjct 597 TACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGAT 656 Query 3315 TCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTA 3374 | |||| ||| |||||||||||||| ||||| || |||||| | | | || Sbjct 657 TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTA 716 Query 3375 TCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAA 3431 | |||||||| | || | | || || ||| |||| | ||||| || ||||| Sbjct 717 TATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAA---AATCCCTAA 773 Query 3432 GTTTTTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCC 3491 | |||| |||| | ||| |||| || || || |||||||| || ||||||||||| Sbjct 774 GCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCC 833 Query 3492 TGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCG 3551 ||| ||||||||||| ||||| | | |||||| | ||||||||||||||| | ||||| Sbjct 834 TGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCG 893 Query 3552 TTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGA 3611 ||||||||| || ||||| |||||| |||||||||| ||||| || || | | || Sbjct 894 TTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCG 953 Query 3612 AGAAATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCA 3671 ||||| | | | || || ||||| ||||||||| ||||||| |||||||| | Sbjct 954 CCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAA 1013 Query 3672 GCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAG 3731 | || ||||| || || ||| |||||| ||||||||||||| ||||||||| || Sbjct 1014 TTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTC 1073 Query 3732 CTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGA 3791 ||||| ||| |||||| ||||| || || ||||| || || ||||| |||| | | | Sbjct 1074 ATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAA 1133 Query 3792 CTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTC 3851 ||||||| || || || || ||||| || || |||||| | || | || || || || Sbjct 1134 TCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTC 1193 Query 3852 TGGTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGG 3911 |||||| || || ||||| | |||||| || |||||||| ||||| || ||||||||||| Sbjct 1194 TGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGG 1253 Query 3912 TGTCATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTA 3971 ||| | ||| | || || |||| || ||||||| | ||| || || Sbjct 1254 CACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTA 1313 Query 3972 TCTTGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGG 4031 ||| | ||| | || || |||||||| ||||||||||||| | | || ||| Sbjct 1314 CCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGG 1373 Query 4032 TAACTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTA 4090 |||||||| || || || ||| ||| | ||| | |||||| |||| ||| || Sbjct 1374 CAACTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTA 1432 Query 4091 TTAAGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTA 4150 ||| |||| |||| ||| | ||||||||| | ||| || ||| | Sbjct 1433 AGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTG 1492 Query 4151 AGTATCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTG 4210 ||||| | | | || ||||| ||| || | || ||| || |||||| Sbjct 1493 CTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG 1543 Query 4211 ATAATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTC 4270 || | || ||| | ||| |||| || || || ||||| || |||||||| Sbjct 1544 ---ATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCG 1600 Query 4271 AGCAGTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGC 4330 |||||| | |||||||| | |||| | | ||| || | ||||||||| || ||| Sbjct 1601 TTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGC 1660 Query 4331 CTACTGTACGTGATTCCATTATGACCTC 4358 | || || ||||| || ||||| || Sbjct 1661 CGACCACTCGCGATTCAATCATGACTTC 1688 Score = 259 bits (286), Expect = 2e-65 Identities = 190/221 (86%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 5247 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 5306 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 5307 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 5366 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5367 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 5426 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATG 2780 |||||||||||||||||||||||||| | ||||| || || Sbjct 5427 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTG 5467 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 3971 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 4030 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 4031 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 4090 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 4091 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4150 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 4151 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4208 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 4209 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4267 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 4268 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4327 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 4328 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4365 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 2862 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 2921 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 2922 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 2976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362182923716